Duration of Stay
I will be at the workshop from July 23rd till July 26th, 2015.
Institutional home page
The slides from my lecture can be found here.
Salichos & Rokas (2013) Overcoming challenges in inferring ancient divergences. Leonidas Salichos was a student in the 2011 course!
Salichos et al. (2014) Novel Measures for Quantifying Phylogenetic Incongruence. Note: the measures described in this paper have been implemented in the latest versions of RAxML, which can be downloaded from here. A draft manual describing how to obtain these metrics can be found here. The RAxML commands required for obtaining these measures are also described in the RAxML manual.
Kobert et al. (2015) Computing internode certainty and related measures from partial gene trees. Note: the measures described in this paper have been implemented in the latest versions of RAxML, which can be downloaded from here.
Other Phylogenomics / Evolutionary Genomics Papers
Soria et al. (2014) Functional Divergence for Every Paralog Patricia Soria was a student in the 2012 course!
Papers on Evolution of Fungal Metabolism
Wisecaver et al. (2014) Evolution of fungal metabolic pathways Jennifer Wisecaver is a student in the 2015 course!
Lind et al. (2015) Rewiring of fungal secondary metabolic pathways Abigail Lind is a student in the 2015 course!