Garli wiki

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useful GARLI documentation in wiki format is available here:



Welcome to the GARLI support wiki!

What is GARLI?

GARLI is a program that performs phylogenetic inference using the maximum-likelihood criterion. Several sequence types are supported, including nucleotide, amino acid and codon. Version 2.0 adds support for partitioned models and morphology-like datatypes. It is usable on all operating systems, and is written and maintained by Derrick Zwickl (zwickl{at}mail.arizona{dot}edu or garli.support{at}gmail{dot}com).

Obtaining GARLI Current Version 2.01

You can download GARLI for Windows or Mac OS X (or get the source code) from Google Code: https://code.google.com/archive/p/garli/

Documentation and support for GARLI

There are a number of options:

This wiki is the primary documentation for the software. It includes

FAQ

Configuration settings

Using partitioned models

And lots of other useful information.


Questions may be posted to a the GARLI user forum through the garli_users google group. You may also email questions and problems to garli{dot}support{at}gmail{dot}com

Known Issues

There are a few known issues. See them here : Known issues with 2.0 Citing GARLI

If you use GARLI please cite

Zwickl, D. J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.

and/or the download website: http://garli.googlecode.com