Scott Edwards

From MolEvol
Scott Galapagos cropped.jpg

Duration of Stay

Wednesday Jul 25 - Sunday. Jul. 29

Institutional Website

Edwards Lab Web Site

Lecture Material

2018:Lecture part I

2018:Lecture part II

Lab Material (not presented in class, but available for exploration)

2018: Tutorial slides

2018: Edwards Lab data files and documentation

2018: Phybase manual

2018: MP-EST v.2.0 manual]

2018: Conservation analysis R script

Key Papers

Edwards (2009): A perspective arguing for the utility of phylogenetic methods using the multispecies coalescent

Liu et al. (2009): A review of methods and issues surrounding "species tree" phylogenetic methods

Degnan & Rosenberg (2009): An excellent review of the multispecies coalescent, including discussion of the anomaly zone

Liu et al. (2010): MP-EST: A maximum likelihood species tree method

Cloutier et al. (2018): [1] Whole-genome analyses resolve the phylogeny of flightless birds (Palaeognathae) in the presence of an empirical anomaly zone. bioRxiv 10.1101/262949.

Sackton et al. (2018): [2] Convergent regulatory evolution and the origin of flightlessness in palaeognathous birds. bioRxiv 10.1101/262584.

Hu, et al. (2018): [3] A hierarchical Bayesian model for detecting convergent rate changes of noncoding conserved elements on phylogenetic trees. bioRxiv 10.1101/260745.

Rheindt et al. (2014): An empirical example of using SNPs for phylogenetics