Difference between revisions of "Bielawski"

From MolEvol
(For the lab)
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     cd 2014_Paml_lab
 
     cd 2014_Paml_lab
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==Plotting for Exercise 1==
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Excel:
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ColumnA --> Omegas
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ColumnB ---> lnL
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 +
Select both
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Insert --> Charts --> Scatter (choose lines)
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Right click on X-axis (omegas) --> Format Axis --> Logarithmic scale

Revision as of 10:25, 31 July 2014

IMG 3038.jpg
P8010973 sm.jpg

Arrival: 26 July 2014

Departure: 06 August 2014


Institutional home pages

Statistics: http://www.mscs.dal.ca/Faculty/bielawski.html

Biology: http://www.bielawski.info


Lecture Materials

Lecture slides (codon models) AND resources for the lab exercises (PAML demo) have been published to a small website. Please note that presentations may change up until the moment the lecture or lab begins. I will post modified PDFs after each talk.

Lecture page: http://myweb.dal.ca/js551958/PAML_lab/lecture_slides.html

PAML demo: http://myweb.dal.ca/js551958/PAML_lab/lab.html

The site contains some additional resources, including an extensive (but not exhaustive) reference list.

For the lab

Log into the cluster

   module load bioware
   wget https://molevol.mbl.edu/images/e/ed/2014_Paml_lab.zip
   unzip 2014_Paml_lab.zip
   cd 2014_Paml_lab

Plotting for Exercise 1

Excel: ColumnA --> Omegas ColumnB ---> lnL

Select both

Insert --> Charts --> Scatter (choose lines)

Right click on X-axis (omegas) --> Format Axis --> Logarithmic scale