Difference between revisions of "Bielawski"

From MolEvol
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'''Lecture Materials'''
 
'''Lecture Materials'''
  
Lecture slides (codon models) AND resources for the lab exercises (PAML demo) have been published to a small website. The site contains some additional resources, including an extensive (but not exhaustive) reference list. Please note that presentations may change up until the moment the lecture or lab begins. I will post modified PDFs after each talk.  
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I have done an extensive update of the lecture slides on codon models for 2016.  The update includes greater coverage of the mechanistic process of codon evolution (via the MutSel framework).  Because there is now less detail about fitting codon models to real data, I have included links to the 2015 slides below; these slides provide more practical information about the powers and pitfalls of inference under codon models.
  
'''Lecture page''': http://myweb.dal.ca/js551958/PAML_lab/lecture_slides.html
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'''2016 Lecture slides, Part 1''':
  
'''Lecture slides, Part 1''': http://myweb.dal.ca/js551958/PAML_lab/Lecture_WH2015_Part1_2slidesPage.pdf
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'''2016 Lecture slides, Part 2''':
  
'''Lecture slides, Part 2''': http://myweb.dal.ca/js551958/PAML_lab/Lecture_WH2015_Part2_2slidesPage.pdf
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(last year's slides)
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'''2015 Lecture slides, Part 1''': http://myweb.dal.ca/js551958/PAML_lab/Lecture_WH2015_Part1_2slidesPage.pdf
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'''2015 Lecture slides, Part 2''': http://myweb.dal.ca/js551958/PAML_lab/Lecture_WH2015_Part2_2slidesPage.pdf
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'''PAML lab Materials'''
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The lab exercises (PAML demo) have been published to a small website (link below). The site contains some additional resources. Please note that presentations may change up until the moment the lecture or lab begins. I will post modified PDFs after each talk.
  
 
'''PAML demo''': http://myweb.dal.ca/js551958/PAML_lab/lab.html
 
'''PAML demo''': http://myweb.dal.ca/js551958/PAML_lab/lab.html
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[https://molevol.mbl.edu/index.php/PAML_notes Notes for the Lab]
 
[https://molevol.mbl.edu/index.php/PAML_notes Notes for the Lab]
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'''Alternative Lab'''

Revision as of 09:38, 13 July 2016

IMG 3038.jpg
P8010973 sm.jpg

Arrival: 19 July 2015

Departure: 30 July 2015


Institutional home pages

Statistics: http://www.mscs.dal.ca/Faculty/bielawski.html

Biology: http://www.bielawski.info


Lecture Materials

I have done an extensive update of the lecture slides on codon models for 2016. The update includes greater coverage of the mechanistic process of codon evolution (via the MutSel framework). Because there is now less detail about fitting codon models to real data, I have included links to the 2015 slides below; these slides provide more practical information about the powers and pitfalls of inference under codon models.

2016 Lecture slides, Part 1:

2016 Lecture slides, Part 2:

(last year's slides)

2015 Lecture slides, Part 1: http://myweb.dal.ca/js551958/PAML_lab/Lecture_WH2015_Part1_2slidesPage.pdf

2015 Lecture slides, Part 2: http://myweb.dal.ca/js551958/PAML_lab/Lecture_WH2015_Part2_2slidesPage.pdf


PAML lab Materials

The lab exercises (PAML demo) have been published to a small website (link below). The site contains some additional resources. Please note that presentations may change up until the moment the lecture or lab begins. I will post modified PDFs after each talk.

PAML demo: http://myweb.dal.ca/js551958/PAML_lab/lab.html

PAML demo slides: http://myweb.dal.ca/js551958/PAML_lab/resources/pamlDEMO_2slidePage.pdf

Notes for the Lab


Alternative Lab