Difference between revisions of "Bielawski"

From MolEvol
(For the lab)
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The site contains some additional resources, including an extensive (but not exhaustive) reference list.
 
The site contains some additional resources, including an extensive (but not exhaustive) reference list.
  
==For the lab==
 
  
Log into the cluster
+
[https://molevol.mbl.edu/index.php/PAML_notes | Notes for the Lab]
 
 
    module load bioware
 
 
 
    wget https://molevol.mbl.edu/images/e/ed/2014_Paml_lab.zip
 
 
 
    unzip 2014_Paml_lab.zip
 
 
 
    cd 2014_Paml_lab
 
 
 
==Plotting for Exercise 1==
 
 
 
Excel:
 
ColumnA --> Omegas
 
ColumnB ---> lnL
 
 
 
Select both
 
 
 
Insert --> Charts --> Scatter (choose lines)
 
 
 
Right click on X-axis (omegas) --> Format Axis --> Logarithmic scale
 

Revision as of 10:27, 31 July 2014

IMG 3038.jpg
P8010973 sm.jpg

Arrival: 26 July 2014

Departure: 06 August 2014


Institutional home pages

Statistics: http://www.mscs.dal.ca/Faculty/bielawski.html

Biology: http://www.bielawski.info


Lecture Materials

Lecture slides (codon models) AND resources for the lab exercises (PAML demo) have been published to a small website. Please note that presentations may change up until the moment the lecture or lab begins. I will post modified PDFs after each talk.

Lecture page: http://myweb.dal.ca/js551958/PAML_lab/lecture_slides.html

PAML demo: http://myweb.dal.ca/js551958/PAML_lab/lab.html

The site contains some additional resources, including an extensive (but not exhaustive) reference list.


| Notes for the Lab