Arrival: 19 July 2015
Departure: 30 July 2015
Institutional home pages
I have done an extensive update of the lecture slides on codon models for 2016. The update includes greater coverage of the mechanistic process of codon evolution (via the MutSel framework). Because there is now less detail about fitting codon models to real data, I have included links to the 2015 slides below; these slides provide more practical information about the powers and pitfalls of inference under codon models.
2016 Lecture slides, Part 1:
2016 Lecture slides, Part 2:
(last year's slides)
2015 Lecture slides, Part 1: http://myweb.dal.ca/js551958/PAML_lab/Lecture_WH2015_Part1_2slidesPage.pdf
2015 Lecture slides, Part 2: http://myweb.dal.ca/js551958/PAML_lab/Lecture_WH2015_Part2_2slidesPage.pdf
PAML lab Materials
The lab exercises (PAML demo) have been published to a small website (link below). The site contains some additional resources. Please note that presentations may change up until the moment the lecture or lab begins. I will post modified PDFs after each talk.
PAML demo slides: http://myweb.dal.ca/js551958/PAML_lab/resources/pamlDEMO_2slidePage.pdf