From MolEvol
Revision as of 10:01, 13 July 2016 by J.P.B. (talk | contribs)
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Arrival: 19 July 2015

Departure: 30 July 2015

Institutional home pages



Lecture Materials

I have done an extensive update of the lecture slides on codon models for 2016. The update includes greater coverage of the mechanistic process of codon evolution (via the MutSel framework). Because there is now less detail about fitting codon models to real data, I have included links to the 2015 slides below; these slides provide more practical information about the powers and pitfalls of inference under codon models.

2016 Lecture slides, Part 1:

2016 Lecture slides, Part 2:

(last year's slides)

2015 Lecture slides, Part 1:

2015 Lecture slides, Part 2:

PAML lab Materials

The lab exercises (PAML demo) have been published to a small website (link below). The site contains some additional resources. Please note that presentations may change up until the moment the lecture or lab begins. I will post modified PDFs after each talk.

PAML demo:

PAML demo slides:

Notes for the Lab

Alternative Lab