Difference between revisions of "Divergence Times"

From MolEvol
(Lab Practical: Divergence time estimation using BEAST)
Line 23: Line 23:
 
* [http://packages.python.org/DendroPy/ DendroPy] (*optional)
 
* [http://packages.python.org/DendroPy/ DendroPy] (*optional)
 
* [http://bodegaphylo.wikispot.org/starttree_program starttree] (*optional)
 
* [http://bodegaphylo.wikispot.org/starttree_program starttree] (*optional)
 +
 +
== Optional Tutorial: Phylodynamics of Infectious Diseases ==
 +
 +
Many students are interested in Bayesian methods for understanding epidemiology. There are some great tools for applying these methods:
 +
 +
* Trevor Bedford's tutorial on: [https://github.com/trvrb/influenza-dynamics-practical Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data]

Revision as of 14:43, 14 July 2013

IMG 1313.jpg

Course materials by Tracy Heath on Bayesian Divergence Time Estimation (2013).

Lecture

Bayesian methods for dating species divergences (slides)

Lab Practical: Divergence time estimation using BEAST

Tutorial

The detailed tutorial and data files can be found here: http://treethinkers.org/divergence-time-estimation-using-beast/

Software

Optional Tutorial: Phylodynamics of Infectious Diseases

Many students are interested in Bayesian methods for understanding epidemiology. There are some great tools for applying these methods: