Difference between revisions of "Edwards lab notes"

From MolEvol
Line 15: Line 15:
 
   best
 
   best
 
   mpest
 
   mpest
 +
 +
To install phybase in R:
 
   R
 
   R
 +
 +
  >install.packages("phybase_a.tar.gz",repos = NULL, type="source")
 +
  >install.packages("ape")
 +
  >library(phybase)

Revision as of 11:48, 2 August 2014

To start the lab:

log into the cluster


   module load bioware


copy the lab exercise files to your home directory

  cp ../molevol-shared/edwards_lab .
  cd edwards lab

To run the software:

  best
  mpest

To install phybase in R:

  R
  >install.packages("phybase_a.tar.gz",repos = NULL, type="source")
  >install.packages("ape")
  >library(phybase)