Difference between revisions of "Edwards lab notes"

From MolEvol
Line 19: Line 19:
 
   R
 
   R
  
   >install.packages("phybase_a.tar.gz",repos = NULL, type="source")
+
   >install.packages("../molevol-software/phybase_a.tar.gz",repos = NULL, type="source")
 
   >install.packages("ape")
 
   >install.packages("ape")
 
   >library(phybase)
 
   >library(phybase)

Revision as of 11:49, 2 August 2014

To start the lab:

log into the cluster


   module load bioware


copy the lab exercise files to your home directory

  cp ../molevol-shared/edwards_lab .
  cd edwards lab

To run the software:

  best
  mpest

To install phybase in R:

  R
  >install.packages("../molevol-software/phybase_a.tar.gz",repos = NULL, type="source")
  >install.packages("ape")
  >library(phybase)