Difference between revisions of "Edwards lab notes"

From MolEvol
Line 9: Line 9:
 
copy the lab exercise files to your home directory
 
copy the lab exercise files to your home directory
  
   cp -r ../molevol-shared/edwards_lab .
+
   cp -r /class/molevol-shared/edwards_lab .
 
   cd edwards_lab
 
   cd edwards_lab
  

Revision as of 16:33, 4 August 2014

To start the lab:

log into the cluster


   module load bioware


copy the lab exercise files to your home directory

  cp -r /class/molevol-shared/edwards_lab .
  cd edwards_lab

for each section of the tutorial, cd in the appropriate directory.

To run the software:

  best
  mpest

To install phybase in R:

  R
  >install.packages("../molevol-software/phybase_a.tar.gz",repos = NULL, type="source")

Respond Y to the questions it will ask about installing locally.

  >library(phybase)