Difference between revisions of "Edwards lab notes"

From MolEvol
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To start the lab:
 
To start the lab:
  
[[media:Edwards_Species_tree_lab_2014.pdf Tutorial here]]
+
[media:Edwards_Species_tree_lab_2014.pdf Tutorial here]
  
  

Revision as of 16:46, 4 August 2014

To start the lab:

[media:Edwards_Species_tree_lab_2014.pdf Tutorial here]


log into the cluster


   module load bioware


copy the lab exercise files to your home directory

  cp -r /class/molevol-shared/edwards_lab .
  cd edwards_lab

for each section of the tutorial, cd in the appropriate directory.

To run the software:

  best
  mpest

To install phybase in R:

  R
  >install.packages("../molevol-software/phybase_a.tar.gz",repos = NULL, type="source")

Respond Y to the questions it will ask about installing locally.

  >library(phybase)