Difference between revisions of "Edwards lab notes"

From MolEvol
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To start the lab:
 
  
 
[[media:Edwards_Species_tree_lab_2014.pdf | Tutorial here]]
 
[[media:Edwards_Species_tree_lab_2014.pdf | Tutorial here]]
  
  
 +
To start the lab:
  
 
log into the cluster
 
log into the cluster

Revision as of 16:47, 4 August 2014

Tutorial here


To start the lab:

log into the cluster


   module load bioware


copy the lab exercise files to your home directory

  cp -r /class/molevol-shared/edwards_lab .
  cd edwards_lab

for each section of the tutorial, cd in the appropriate directory.

To run the software:

  best
  mpest

To install phybase in R:

  R
  >install.packages("../molevol-software/phybase_a.tar.gz",repos = NULL, type="source")

Respond Y to the questions it will ask about installing locally.

  >library(phybase)