Difference between revisions of "Edwards lab notes"

From MolEvol
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= To install phybase in R: =
+
= To install phybase in R on the cluster: =
 
   R
 
   R
 
All commands after the '>' should be entered into R.
 
All commands after the '>' should be entered into R.
 
   > install.packages("/class/molevol-software/phybase_1.4.tar.gz",repos = NULL, type="source")
 
   > install.packages("/class/molevol-software/phybase_1.4.tar.gz",repos = NULL, type="source")
 +
 +
On your home machine download phybase from
 +
    http://faculty.franklin.uga.edu/lliu/content/phybase
 +
and replace the path in the command above with your download location.

Revision as of 14:52, 28 July 2015

pdf of Tutorial here

To start the lab:

Note updated links!!

log into the cluster

   module load bioware

copy the lab exercise files to your home directory

  wget https://molevol.mbl.edu/images/1/1f/Edwards_lab_2015.zip
  unzip Edwards_lab_2015.zip

for each section of the tutorial, cd in the appropriate directory.


To install phybase in R on the cluster:

  R

All commands after the '>' should be entered into R.

  > install.packages("/class/molevol-software/phybase_1.4.tar.gz",repos = NULL, type="source")

On your home machine download phybase from

   http://faculty.franklin.uga.edu/lliu/content/phybase

and replace the path in the command above with your download location.