Difference between revisions of "Edwards lab notes"

From MolEvol
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[[media:https://molevol.mbl.edu/images/4/49/Edwards_species_tree_lab_2016.pdf | pdf of Tutorial here]]
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[[media:Edwards_species_tree_lab_2016.pdf | pdf of Tutorial here]]
  
 
To start the lab:
 
To start the lab:

Revision as of 20:02, 25 July 2016

pdf of Tutorial here

To start the lab:

Note updated links!!

log into the cluster

   module load bioware

copy the lab exercise files to your home directory

  wget https://molevol.mbl.edu/images/7/75/Edwards_species_tree_lab.zip 
  unzip Edwards_species_tree_lab.zip

for each section of the tutorial, cd in the appropriate directory.

To install phybase in R on the cluster:

  R

All commands after the '>' should be entered into R.

  > install.packages("/class/molevol-software/phybase_1.4.tar.gz",repos = NULL, type="source")

On your home machine download phybase from

   http://faculty.franklin.uga.edu/lliu/content/phybase

and replace the path in the command above with your download location.