Edwards lab notes
To start the lab:
log into the cluster
module load bioware
copy the lab exercise files to your home directory
wget https://molevol.mbl.edu/images/1/1f/Edwards_lab_2015.zip unzip Edwards_lab_2015.zip
for each section of the tutorial, cd in the appropriate directory.
To install phybase in R on the cluster:
All commands after the '>' should be entered into R.
> install.packages("/class/molevol-software/phybase_1.4.tar.gz",repos = NULL, type="source")
On your home machine download phybase from
and replace the path in the command above with your download location.