Edwards lab notes

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Revision as of 12:48, 29 July 2017 by Sedwards (talk | contribs) (To install phybase in R on the cluster:)
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pdf of Tutorial here

To start the lab:

Note updated links!!

log into the cluster. We will load the software we need using the command:

   module load bioware

copy the lab exercise files to your home directory

  wget https://molevol.mbl.edu/images/7/75/Edwards_species_tree_lab.zip 
  unzip Edwards_species_tree_lab.zip

for each section of the tutorial, cd in the appropriate directory.

To invoke phybase in R on the cluster:


All commands after the '>' should be entered into R.

  > library(phybase)

On your home machine download phybase from


and replace the path in the command above with your download location.