Difference between revisions of "John Huelsenbeck"

From MolEvol
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     - [[Media:WoodsHole2012_2.pdf|Bayesian Phylogenetic Analysis, II]]
 
     - [[Media:WoodsHole2012_2.pdf|Bayesian Phylogenetic Analysis, II]]
 
     - [[Media:WoodsHoleHandout.pdf|Bayesian Phylogenetic Analysis, Supp.]]
 
     - [[Media:WoodsHoleHandout.pdf|Bayesian Phylogenetic Analysis, Supp.]]
 
Lab Files:
 
    - [https://molevol.mbl.edu/wiki/index.php/MrBayes wiki page]
 
    - [[Media:WoodsHole2012_tutorial.zip]]
 
    - [[Media:MrBayes_tutorial_instructions.zip]]
 
  
  

Revision as of 16:35, 24 July 2013

Slides/Presentations:

   - Bayesian Phylogenetic Analysis, I
   - Bayesian Phylogenetic Analysis, II
   - Bayesian Phylogenetic Analysis, Supp.


John's lab page: http://ib.berkeley.edu/people/lab_detail.php?lab=54

Files Generated during the lecture/lab:

  • simwithdice.nex - a NEXUS file with the data patterns that the class generated using 10-sided dice.
  • coin_flip_mcmc.py - a Python program that implements the MCMC for estimating a coin's bias based on a number of heads and tails observed. This is not the code written during the lecture by John. It is an equivalent version of John's C++ implementation written (by Mark Holder) using the Python programming language. If you download it, then you can run it (from a Terminal) with the command python coin_flip_mcmc.py