Difference between revisions of "MarkHolder"

From MolEvol
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(from 2019 lectures)
 
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http://phylo.bio.ku.edu/content/mark-t-holder
 
http://phylo.bio.ku.edu/content/mark-t-holder
  
[http://www2.ku.edu/~eeb/ Department of Ecology and Evolutionary Biology<br/>University of Kansas]
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[http://www2.ku.edu/~eeb/ Department of Ecology and Evolutionary Biology and Biodiversity Institute<br/>University of Kansas]
  
 
== Time at MBL ==
 
== Time at MBL ==
I'll be at Woods Hole from July 20 to July 30.
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I'll be at Woods Hole from July 31 to August 12.
  
== Labs ==
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== from 2019 lectures ==
A parametric bootstrapping lab index is [[ParametricBootstrappingLab| here]]
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[https://molevol.mbl.edu/images/d/dd/Holder_phylo_intro_and_msa.pdf Intro and Alignment]
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[https://molevol.mbl.edu/images/8/83/Tree-searching-mth-2019.pdf Tree searching]
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[https://mtholder.github.io/reveal/john-huelsenbeck-dice.html#/ Slides I've used when teaching John Huelsenbeck's dice demo]
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[https://molevol.mbl.edu/images/8/81/Holder_last_lecture_2019.pdf MTH slides Sunday morning Aug 11, 2019]
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== from 2018 lectures ==
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http://phylo.bio.ku.edu/woodshole/phylogenetics_intro_2018.pdf
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http://phylo.bio.ku.edu/woodshole/holder_last_lecture.pdf
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[https://mtholder.github.io/reveal/biol-428-systematics-guest-lecture-2018.html#/4 Open Tree Slides]
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== from 2017 ==
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We are just going to do the 2 snake data set examples:
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https://molevol.mbl.edu/index.php/SnakeTopoParametricBootstrappingLab
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and
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https://molevol.mbl.edu/index.php/CharacterEvoParametricBootstrappingLab
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(the parametric bootstrapping lab index is [[ParametricBootstrappingLab| here]])
  
== Lecture ==
 
 
Slides are '''very likely''' to change at the last minute, but you can take a look at the current state of them.
 
Slides are '''very likely''' to change at the last minute, but you can take a look at the current state of them.
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The tree topology lecture:  [http://phylo.bio.ku.edu/slides/HolderTestingLectureWoodsHole2017.pdf HolderTestingLectureWoodsHole2017.pdf] (2017)
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== Older lectures ==
  
 
The 2016 brief alignment intro: [http://phylo.bio.ku.edu/woodshole/msa-2016.pdf msa-2016.pdf] (2016)
 
The 2016 brief alignment intro: [http://phylo.bio.ku.edu/woodshole/msa-2016.pdf msa-2016.pdf] (2016)
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A few slides on model selection:  [http://phylo.bio.ku.edu/woodshole/convincing-arg-model-selection.pdf convincing-arg-model-selection.pdf] (2016)
 
A few slides on model selection:  [http://phylo.bio.ku.edu/woodshole/convincing-arg-model-selection.pdf convincing-arg-model-selection.pdf] (2016)
  
The tree topology lecture:  [http://phylo.bio.ku.edu/woodshole/HolderTestingLectureWoodsHole.pdf HolderTestingLectureWoodsHole.pdf] (2016)
 
  
 
Other resources are at '''http://phylo.bio.ku.edu/woodshole/index.html'''
 
Other resources are at '''http://phylo.bio.ku.edu/woodshole/index.html'''

Latest revision as of 07:52, 11 August 2019

Mtholder square.jpg

Mark Holder

Check out: http://phylo.bio.ku.edu/woodshole/index.html for course-related content.

http://phylo.bio.ku.edu/content/mark-t-holder

Department of Ecology and Evolutionary Biology and Biodiversity Institute
University of Kansas

Time at MBL

I'll be at Woods Hole from July 31 to August 12.

from 2019 lectures

Intro and Alignment

Tree searching

Slides I've used when teaching John Huelsenbeck's dice demo

MTH slides Sunday morning Aug 11, 2019

from 2018 lectures

http://phylo.bio.ku.edu/woodshole/phylogenetics_intro_2018.pdf

http://phylo.bio.ku.edu/woodshole/holder_last_lecture.pdf

Open Tree Slides

from 2017

We are just going to do the 2 snake data set examples:

https://molevol.mbl.edu/index.php/SnakeTopoParametricBootstrappingLab

and

https://molevol.mbl.edu/index.php/CharacterEvoParametricBootstrappingLab


(the parametric bootstrapping lab index is here)

Slides are very likely to change at the last minute, but you can take a look at the current state of them.

The tree topology lecture: HolderTestingLectureWoodsHole2017.pdf (2017)

Older lectures

The 2016 brief alignment intro: msa-2016.pdf (2016)

The 2016 GARLI lecture: Zwickl.WoodsHole2016.pdf (2016)

A few slides on model selection: convincing-arg-model-selection.pdf (2016)


Other resources are at http://phylo.bio.ku.edu/woodshole/index.html

Other resources