Difference between revisions of "Open lab"

From MolEvol
(Additional optional labs)
(Additional optional labs)
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* [http://compevol.auckland.ac.nz/ Alexei Drummand] & Remco Bouckaert's [http://beast2.cs.auckland.ac.nz/index.php/Main_Page BEAST2] tutorial on: [http://beast2.googlecode.com/files/MEPsv2.0.2.pdf Measurably evolving populations, estimating rates, and Bayesian skyline plots]
 
* [http://compevol.auckland.ac.nz/ Alexei Drummand] & Remco Bouckaert's [http://beast2.cs.auckland.ac.nz/index.php/Main_Page BEAST2] tutorial on: [http://beast2.googlecode.com/files/MEPsv2.0.2.pdf Measurably evolving populations, estimating rates, and Bayesian skyline plots]
 
* [http://www.trevorbedford.com/ Trevor Bedford's] tutorial on (using BEAST1): [https://github.com/trvrb/influenza-dynamics-practical Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data]
 
* [http://www.trevorbedford.com/ Trevor Bedford's] tutorial on (using BEAST1): [https://github.com/trvrb/influenza-dynamics-practical Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data]
* Information about [http://treethinkers.org/tutorials/mcmc-diagnosis/ analyzing MCMC output] (convergence diagnostics, prior sensitivity, etc.) by Brian Moore
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* Information about [http://treethinkers.org/tutorials/mcmc-diagnosis/ analyzing MCMC output] (convergence diagnostics, prior sensitivity, etc.) by [http://biosci3.ucdavis.edu/FacultyAndResearch/FacultyProfile.aspx?FacultyID=14355 Brian Moore]
 
* Tutorial on [http://www.robertlanfear.com/partitionfinder/tutorial/ model selection using PartitionFinder]
 
* Tutorial on [http://www.robertlanfear.com/partitionfinder/tutorial/ model selection using PartitionFinder]
* Tutorial on [http://treethinkers.org/tutorials/morphological-evolution-in-r/ the evolution of morphological characters] using [http://cran.us.r-project.org/ R] by Samantha Price
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* Tutorial on [http://treethinkers.org/tutorials/morphological-evolution-in-r/ the evolution of morphological characters] using [http://cran.us.r-project.org/ R] by [http://www.eve.ucdavis.edu/~wainwrightlab/Sam%20webpage/Site/Welcome.html Samantha Price]
 
*Alternative [http://evomics.org/learning/phylogenetics/mrbayes/ MrBayes tutorial] with exercise on assessing convergence and output quality using Tracer (exercise 2) by [[Conor_Meehan |Conor Meehan]] and [[Tracy_Heath |Tracy Heath]]
 
*Alternative [http://evomics.org/learning/phylogenetics/mrbayes/ MrBayes tutorial] with exercise on assessing convergence and output quality using Tracer (exercise 2) by [[Conor_Meehan |Conor Meehan]] and [[Tracy_Heath |Tracy Heath]]
* Applying [http://treethinkers.org/tutorials/continuous-trait-evolution/ independent contrasts], a tutorial on continuous-trait evolution by Luke Mahler
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* Applying [http://treethinkers.org/tutorials/continuous-trait-evolution/ independent contrasts], a tutorial on continuous-trait evolution by [http://lukemahler.com/ Luke Mahler]
 
* [http://nucleus.biology.duke.edu/~bredelings/bali-phy-www/Tutorial2.html Tutorial on alignment] using [http://faculty.biomath.ucla.edu/msuchard/htdocs/bali-phy/ Bali-Phy] by [http://people.duke.edu/~br51/ Ben Redelings]
 
* [http://nucleus.biology.duke.edu/~bredelings/bali-phy-www/Tutorial2.html Tutorial on alignment] using [http://faculty.biomath.ucla.edu/msuchard/htdocs/bali-phy/ Bali-Phy] by [http://people.duke.edu/~br51/ Ben Redelings]
  

Revision as of 07:30, 27 July 2013

Life after Woods Hole

Additional Links

Links to information shared in the open lab:

Using the *FREE* iPlant cluster


Additional optional labs

Miscellany

Links to (somewhat off-topic) things that came up in discussions at the Captain Kidd (or elsewhere)

  • Sim Daltonism: a program that simulates how colors are perceived by people with different types of color blindness
  • PhyloPic: a repository for silhouette images of living organisms