Difference between revisions of "RevBayes"

From MolEvol
(Data & Analysis Files)
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====Data & Analysis Files====
====Data & Analysis Files====
* [[Media:Primates.zip | Primates.zip]]
* [[Media:Primates.zip | Primates.zip]]
* [https://raw.githubusercontent.com/revbayes/revbayes_tutorial/master/RB_CTMC_Tutorial/RevBayes_scripts/JukesCantor.nonclock.Rev  JC Analysis File]
* [https://raw.githubusercontent.com/revbayes/revbayes_tutorial/master/RB_CTMC_Tutorial/scripts/JukesCantor.nonclock.Rev  JC Analysis File]
* [https://raw.githubusercontent.com/revbayes/revbayes_tutorial/master/RB_CTMC_Tutorial/RevBayes_scripts/GTR_Gamma.nonclock.Rev GTR Analysis File]
* [https://raw.githubusercontent.com/revbayes/revbayes_tutorial/master/RB_CTMC_Tutorial/scripts/GTR_Gamma.nonclock.Rev GTR Analysis File]
==== On the MBL Cluster ====
==== On the MBL Cluster ====

Revision as of 08:05, 18 July 2016

Course materials by Tracy Heath and Michael Landis on substitution models and phylogenetic reconstruction in RevBayes


  • Introduction to RevBayes slides
  • RevBayes script for demo: lnorm.Rev

Phylogenetic Inference using RevBayes: Substitution Models for Unconstrained Trees


Software downloads, tutorials, documentation, and other resources can be found on the RevBayes web page: http://revbayes.com

RevBayes source code can be found on GitHub: https://github.com/revbayes/revbayes


The detailed lab practical document can be found here: tutorial PDF

Help files

Online Help Files

  • Search for RevBayes commands in the upper right corner.
  • Filter by command type by (un-)checking boxes.

Data & Analysis Files

On the MBL Cluster

On the course cluster create a directory to run your analysis:

mkdir RB_tutorial
cd RB_tutorial

Download the data directory containing the data file:

wget https://molevol.mbl.edu/images/8/80/Primates.zip

Un-zip the downloaded file (this will create a directory containing the file "primates_cytb.nex"

unzip Primates.zip

Execute RevBayes:


Additional Software