Difference between revisions of "RevBayes"

From MolEvol
(Phylogenetic Inference using RevBayes: Substitution Models for Unconstrained Trees)
(Tutorial)
Line 15: Line 15:
  
 
=== Tutorial ===
 
=== Tutorial ===
The data files and Rev scripts can be found here: [https://revbayes.github.io/tutorials.html]  
+
 
 +
====Data & Analysis Files====
 +
* [https://raw.githubusercontent.com/revbayes/revbayes_tutorial/master/RB_CTMC_Tutorial/data/primates_cytb.nex primates_cytb.nex]
 +
* [https://raw.githubusercontent.com/revbayes/revbayes_tutorial/master/RB_CTMC_Tutorial/RevBayes_scripts/JukesCantor.nonclock.Rev JC Analysis File]
 +
* [https://raw.githubusercontent.com/revbayes/revbayes_tutorial/master/RB_CTMC_Tutorial/RevBayes_scripts/GTR_Gamma.nonclock.Rev GTR Analysis File]
  
 
On the course cluster download the data files:
 
On the course cluster download the data files:
Line 42: Line 46:
 
</pre>
 
</pre>
  
The detailed lab practical document can be found here: [[media:RB_BayesFactor_Tutorial.pdf‎ | tutorial PDF]]  
+
The detailed lab practical document can be found here: [[media:RB_BayesFactor_Tutorial.pdf‎ | tutorial PDF]]
  
 
=== Software ===
 
=== Software ===

Revision as of 15:20, 21 July 2015

Course materials by Tracy Heath, Michael Landis, and Sebastian Höhna on model selection and data partitioning in RevBayes


Lecture

Introduction to RevBayes slides are available on slideshare

Phylogenetic Inference using RevBayes: Substitution Models for Unconstrained Trees

RevBayes

Software downloads, tutorials, documentation, and other resources can be found on the RevBayes web page: http://revbayes.com
RevBayes source code can be found on GitHub: https://github.com/revbayes/revbayes


Tutorial

Data & Analysis Files

On the course cluster download the data files:

wget https://molevol.mbl.edu/images/7/76/RB_BayesFactor_files.tar.gz

Uncompress the tutorial file directory:

tar xzf RB_BayesFactor_files.tar.gz

Navigate to the tutorial directory:

cd RB_tutorial_files

Add the RevBayes module:

module load revbayes

Execute RevBayes:

rb

The detailed lab practical document can be found here: tutorial PDF

Software