Difference between revisions of "RevBayes"

From MolEvol
(Tutorial)
(Software)
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=== Software ===
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=== Additional Software ===
  
* [https://github.com/revbayes/code RevBayes] (the wh_tutorial branch is maintained for this tutorial)
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* [http://tree.bio.ed.ac.uk/software/tracer/ Tracer]  
 
* [http://tree.bio.ed.ac.uk/software/figtree/ FigTree]
 
* [http://tree.bio.ed.ac.uk/software/figtree/ FigTree]

Revision as of 15:23, 21 July 2015

Course materials by Tracy Heath, Michael Landis, and Sebastian Höhna on model selection and data partitioning in RevBayes


Lecture

Introduction to RevBayes slides are available on slideshare

Phylogenetic Inference using RevBayes: Substitution Models for Unconstrained Trees

RevBayes

Software downloads, tutorials, documentation, and other resources can be found on the RevBayes web page: http://revbayes.com
RevBayes source code can be found on GitHub: https://github.com/revbayes/revbayes


Tutorial

The detailed lab practical document can be found here: tutorial PDF

Data & Analysis Files

On the course cluster download the data files:

wget https://molevol.mbl.edu/images/7/76/RB_BayesFactor_files.tar.gz

Uncompress the tutorial file directory:

tar xzf RB_BayesFactor_files.tar.gz

Navigate to the tutorial directory:

cd RB_tutorial_files

Add the RevBayes module:

module load revbayes

Execute RevBayes:

rb

Additional Software