Difference between revisions of "RevBayes"

From MolEvol
(On the MBL Cluster)
(On the MBL Cluster)
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wget https://molevol.mbl.edu/images/8/80/Primates.zip
 
wget https://molevol.mbl.edu/images/8/80/Primates.zip
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Un-zip the downloaded file (this will create a directory containing the file "primates_cytb.nex"
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unzip Primates.zip
 
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Revision as of 10:54, 22 July 2015

Course materials by Tracy Heath and Michael Landis on substitution models and phylogenetic reconstruction in RevBayes


Lecture

Introduction to RevBayes slides are available on slideshare

Phylogenetic Inference using RevBayes: Substitution Models for Unconstrained Trees

RevBayes

Software downloads, tutorials, documentation, and other resources can be found on the RevBayes web page: http://revbayes.com

RevBayes source code can be found on GitHub: https://github.com/revbayes/revbayes

Tutorial

The detailed lab practical document can be found here: tutorial PDF

Data & Analysis Files

On the MBL Cluster

On the course cluster create a directory to run your analysis:

mkdir RB_tutorial
cd RB_tutorial

Download the data directory containing the data file:

wget https://molevol.mbl.edu/images/8/80/Primates.zip

Un-zip the downloaded file (this will create a directory containing the file "primates_cytb.nex"

unzip Primates.zip

Add the bioware module:

module load bioware

Execute RevBayes:

rb

Additional Software