Difference between revisions of "RevBayes"

From MolEvol
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Add the bioware module:
 
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module load bioware
 
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Execute RevBayes:
 
Execute RevBayes:

Revision as of 15:39, 17 July 2016

Course materials by Tracy Heath and Michael Landis on substitution models and phylogenetic reconstruction in RevBayes


Lecture

  • Introduction to RevBayes slides
  • RevBayes script for demo: lnorm.Rev


Phylogenetic Inference using RevBayes: Substitution Models for Unconstrained Trees

RevBayes

Software downloads, tutorials, documentation, and other resources can be found on the RevBayes web page: http://revbayes.com

RevBayes source code can be found on GitHub: https://github.com/revbayes/revbayes

Tutorial

The detailed lab practical document can be found here: tutorial PDF

Help files

Online Help Files

  • Search for RevBayes commands in the upper right corner.
  • Filter by command type by (un-)checking boxes.

Data & Analysis Files

On the MBL Cluster

On the course cluster create a directory to run your analysis:

mkdir RB_tutorial
cd RB_tutorial

Download the data directory containing the data file:

wget https://molevol.mbl.edu/images/8/80/Primates.zip

Un-zip the downloaded file (this will create a directory containing the file "primates_cytb.nex"

unzip Primates.zip


Execute RevBayes:

rb

Additional Software