From MolEvol
Revision as of 10:54, 22 July 2015 by Theath (talk | contribs) (On the MBL Cluster)

Course materials by Tracy Heath and Michael Landis on substitution models and phylogenetic reconstruction in RevBayes


Introduction to RevBayes slides are available on slideshare

Phylogenetic Inference using RevBayes: Substitution Models for Unconstrained Trees


Software downloads, tutorials, documentation, and other resources can be found on the RevBayes web page:

RevBayes source code can be found on GitHub:


The detailed lab practical document can be found here: tutorial PDF

Data & Analysis Files

On the MBL Cluster

On the course cluster create a directory to run your analysis:

mkdir RB_tutorial
cd RB_tutorial

Download the data directory containing the data file:


Un-zip the downloaded file (this will create a directory containing the file "primates_cytb.nex"


Add the bioware module:

module load bioware

Execute RevBayes:


Additional Software