Difference between revisions of "Schedule"

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===<span style="color:red;">***THE BELOW SCHEDULE FOR 2018 IS UNDER DEVELOPMENT***===
 
===<span style="color:red;">***THE BELOW SCHEDULE FOR 2018 IS UNDER DEVELOPMENT***===
  
===Opening Activities: 7 PM Thursday, July 19th, Opening Reception===
+
===Opening Activities: 7 PM Thursday, July 19th, Reception in the Meigs Room in the [[:file:Swope-with-Eel-pond.jpg|Swope Building]] ===
  
 
===All morning sessions are in [[:file:rowe.jpg|Rowe]], afternoons and evenings will be in room G70 of the [[:file:Loeb.jpeg|Loeb building]] ===
 
===All morning sessions are in [[:file:rowe.jpg|Rowe]], afternoons and evenings will be in room G70 of the [[:file:Loeb.jpeg|Loeb building]] ===
  
===Group photo: Tentative Tuesday July 24 at 10:30 outside of Rowe building===
+
===Group photo: Tuesday July 24 at 10:30 (tentative) outside of Rowe building===
 +
 
  
 
== First Week ==
 
== First Week ==
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|- style="background:SteelBlue"
 
|- style="background:SteelBlue"
 
| align="center" width="14.3%" |  
 
| align="center" width="14.3%" |  
| align="center" width="14.3%" style="color:white" | '''Thursday'''<br/>(20 July)
+
| align="center" width="14.3%" style="color:white" | '''Thursday'''<br/>(19 July)
| align="center" width="14.3%" style="color:white" | '''Friday'''<br/>(21 July)
+
| align="center" width="14.3%" style="color:white" | '''Friday'''<br/>(20 July)
| align="center" width="14.3%" style="color:white" | '''Saturday'''<br/>(22 July)
+
| align="center" width="14.3%" style="color:white" | '''Saturday'''<br/>(21 July)
| align="center" width="14.3%" style="color:white" | '''Sunday'''<br/>(23 July)
+
| align="center" width="14.3%" style="color:white" | '''Sunday'''<br/>(22 July)
 
|-
 
|-
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''09:00-10:30'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''09:00-10:30'''
 
| align="center" width="14.3%" style="background:#DCDCDC" |
 
| align="center" width="14.3%" style="background:#DCDCDC" |
| align="center" width="14.3%" | '''[[Anne Yoder|Yoder]]'''      <br/>(Welcome, Introduction &<br/> '''1 min Student Presentations''')
+
| align="center" width="14.3%" | '''[[Bielawski|Bielawski]]'''      <br/>(Welcome &<br/> '''1 min Student Presentations''')
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(ML phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(ML phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(Bayesian phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(Bayesian phylogenetics)
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| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''10:30-12:00'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''10:30-12:00'''
 
| align="center" width="14.3%" style="background:#DCDCDC" |
 
| align="center" width="14.3%" style="background:#DCDCDC" |
| align="center" width="14.3%" | '''[[David Hillis|Hillis]]'''  <br/>(Power, efficiency, consistency)
+
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''  <br/>(Phylogenetic considerations)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(ML phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(ML phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(Bayesian phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(Bayesian phylogenetics)
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|-
 
|-
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''19:00-20:30'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''19:00-20:30'''
| align="center" width="14.3%" | [https://molevol.mbl.edu/index.php/Computer_lab_introduction '''Computer lab, room G70 Loeb (basement)''']
+
| align="center" width="14.3%" style="background:#F2E0CE" | '''Welcome & opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Terrace]]'''
| align="center" width="14.3%" | '''[[William_Pearson|Pearson]]'''       <br/>(Sequence homology)
+
| align="center" width="14.3%" | '''[[Williams]]'''                         <br/> [https://molevol.mbl.edu/index.php/Computer_lab_introduction '''Intro computer lab''']
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''             <br/>(Branch support & tree tests)
 
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://molevol.mbl.edu/images/d/d5/ML_search.pdf Maximum likelihood tree searching])
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://molevol.mbl.edu/images/d/d5/ML_search.pdf Maximum likelihood tree searching])
 +
| align="center" width="14.3%" | '''[[Cecile Ane]]'''  <br/>(Network models)
 
|-
 
|-
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''20:30-22:00'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''20:30-22:00'''
| align="center" width="14.3%" |  '''Opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Terrace]]'''
+
| align="center" width="14.3%" style="background:#F2E0CE"  |  '''Opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Terrace]]'''
| align="center" width="14.3%" | '''[[William_Pearson|Pearson]]'''       <br/>(FASTA/BLAST lab)
+
| align="center" width="14.3%" | '''[[Williams]]'''   <br/>(BLAST &<br/> Alignment lab)
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''              <br/>(Branch support & tree tests)
 
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://mctavishlab.github.io/MLsearchLab Maximum Likelihood Search])
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://mctavishlab.github.io/MLsearchLab Maximum Likelihood Search])
 +
| align="center" width="14.3%" | '''[[Cecile Ane]]'''  <br/>(Network models)
 
|-
 
|-
 
|}
 
|}
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|- style="background:SteelBlue"
 
|- style="background:SteelBlue"
 
| align="center" width="13.5%" |  
 
| align="center" width="13.5%" |  
| align="center" width="13.5%" style="color:white" | '''Monday'''<br/>(24 July)
+
| align="center" width="13.5%" style="color:white" | '''Monday'''<br/>(23 July)
| align="center" width="13.5%" style="color:white" | '''Tuesday'''<br/>(25 July)
+
| align="center" width="13.5%" style="color:white" | '''Tuesday'''<br/>(24 July)
| align="center" width="5%" style="color:white" | '''Wednesday'''<br/>(26 July)
+
| align="center" width="5%" style="color:white" | '''Wednesday'''<br/>(25 July)
| align="center" width="13.5%" style="color:white" | '''Thursday'''<br/>(27 July)
+
| align="center" width="13.5%" style="color:white" | '''Thursday'''<br/>(26 July)
| align="center" width="13.5%" style="color:white" | '''Friday'''<br/>(28 July)
+
| align="center" width="13.5%" style="color:white" | '''Friday'''<br/>(27 July)
| align="center" width="13.5%" style="color:white" | '''Saturday'''<br/>(29 July)
+
| align="center" width="13.5%" style="color:white" | '''Saturday'''<br/>(28 July)
| align="center" width="13.5%" style="color:white" | '''Sunday'''<br/>(30 July)
+
| align="center" width="13.5%" style="color:white" | '''Sunday'''<br/>(29 July)
 
|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''09:00-10:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''09:00-10:30'''
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''    <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Parts1and2.pdf Codon models, Parts1and2])
+
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''    <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Parts1and2.pdf Drift, selection & codon models])
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''      <br/>(Integrative Bayesian Analyses)
+
| align="center" width="13.5%" | '''[[Laura Eme]]'''      <br/>(Substitution models for proteins)
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''    <br/>([https://peterbeerli.com/workshops/mbl/2016/talk1.pdf Introduction to the Coalescence])<br/>   
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''    <br/>([https://peterbeerli.com/workshops/mbl/2016/talk1.pdf Introduction to the Coalescence])<br/>   
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|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''10:30-12:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''10:30-12:00'''
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''<br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part3.pdf Codon models, Part3])
+
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''<br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part3.pdf Statistical analyses])
([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part4.pdf Part4])
+
([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part4.pdf Phenomenologcial load])
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''<br/>(Divergence-time estimation and Biogeography])
+
| align="center" width="13.5%" | '''[[Laura Eme]]'''       <br/>(Multi-gene phylogenetics:<br/>methods & applications)
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
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| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''14:00-15:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''14:00-15:30'''
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/3/33/Protein_Evolution_%26_Ancestral_Reconstruction.pdf Protein evolution & ancestral reconstruction])
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/3/33/Protein_Evolution_%26_Ancestral_Reconstruction.pdf Protein evolution & ancestral reconstruction])
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''<br/>([https://molevol.mbl.edu/index.php/Total-evidence_analysis_in_RevBayes RevBayes])
+
| align="center" width="13.5%" | '''[[Bui Quang Minh ]]'''<br/>(IQ-TREE)
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
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| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''15:30-17:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''15:30-17:00'''
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/a/a3/Adaptive_Protein_Evolution.pdf Adaptive protein evolution])
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/a/a3/Adaptive_Protein_Evolution.pdf Adaptive protein evolution])
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''<br/>([https://molevol.mbl.edu/index.php/Total-evidence_analysis_in_RevBayes RevBayes])
+
| align="center" width="13.5%" | '''[[Bui Quang Minh ]]'''<br/>(IQ-TREE)
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extensions to coalescence])
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extensions to coalescence])
 
| align="center" width="13.5%" | '''[[David Weisrock|Weisrock]]''' <br/>([[:file:Weisrock_WH_RADseq.pdf |Intro to RADseq]])
 
| align="center" width="13.5%" | '''[[David Weisrock|Weisrock]]''' <br/>([[:file:Weisrock_WH_RADseq.pdf |Intro to RADseq]])
 
| align="center" width="13.5%" |  '''[[Conor Meehan|Meehan]]'''<br/>(Species Tree Lab III: *BEAST2)<br/>
 
| align="center" width="13.5%" |  '''[[Conor Meehan|Meehan]]'''<br/>(Species Tree Lab III: *BEAST2)<br/>
| align="center" width="13.5%" | '''Open lab'''
+
| align="center" width="13.5%" | '''Open lab'''
 
|-
 
|-
 
|-
 
|-
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|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''19:00-20:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''19:00-20:30'''
| align="center" width="13.5%" | '''Open lab'''
+
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''     <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Parts1and2.pdf LINK])
 
| align="center" width="13.5%" style="background:#F2E0CE" | '''Course dinner party'''<br/>Lobster Boil, Terrace<br/>Starts at 6pm
 
| align="center" width="13.5%" style="background:#F2E0CE" | '''Course dinner party'''<br/>Lobster Boil, Terrace<br/>Starts at 6pm
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
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|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''20:30-22:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''20:30-22:00'''
| align="center" width="13.5%" | '''Open lab'''
+
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''     <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Parts1and2.pdf LINK])
 
| align="center" width="13.5%" style="background:#F2E0CE" |  '''Course dinner party'''
 
| align="center" width="13.5%" style="background:#F2E0CE" |  '''Course dinner party'''
 
| align="center" width="5%" style="background:#DCDCDC"|   
 
| align="center" width="5%" style="background:#DCDCDC"|   
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|}
 
|}
 
<br/>
 
<br/>
 +
 +
TEMP:
 +
'''[[MarkHolder|Holder]]'''        <br/>(Branch support & tree tests)
 +
'''[[Tracy Heath|Heath]]'''      <br/>(Integrative Bayesian Analyses)
 +
'''[[Tracy Heath|Heath]]'''      <br/>(Divergence-time estimation and Biogeography])
 +
'''[[Tracy Heath|Heath]]'''        <br/>([https://molevol.mbl.edu/index.php/Total-evidence_analysis_in_RevBayes RevBayes])
 +
'''[[Tracy Heath|Heath]]'''        <br/>([https://molevol.mbl.edu/index.php/Total-evidence_analysis_in_RevBayes RevBayes])

Revision as of 19:28, 2 January 2018

How to prepare for the Workshop on Molecular Evolution

Please download and install the software listed here: Downloads

***THE BELOW SCHEDULE FOR 2018 IS UNDER DEVELOPMENT***

Opening Activities: 7 PM Thursday, July 19th, Reception in the Meigs Room in the Swope Building

All morning sessions are in Rowe, afternoons and evenings will be in room G70 of the Loeb building

Group photo: Tuesday July 24 at 10:30 (tentative) outside of Rowe building

First Week

Thursday
(19 July)
Friday
(20 July)
Saturday
(21 July)
Sunday
(22 July)
09:00-10:30 Bielawski
(Welcome &
1 min Student Presentations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
10:30-12:00 Holder
(Phylogenetic considerations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
12:00-14:00 Lunch break
14:00-15:30 Dunn
(Phylogenomics & methods)
Swofford
(Model selection)
Huelsenbeck
(Simulation lab++)
15:30-17:00 Dunn
(Phylogenomics & methods)
Swofford
(PAUP)
Huelsenbeck
(Why I like ML & Bayes)
17:00-19:00 Dinner break
19:00-20:30 Welcome & opening reception
Swope Terrace
Williams
Intro computer lab
McTavish
(Maximum likelihood tree searching)
Cecile Ane
(Network models)
20:30-22:00 Opening reception
Swope Terrace
Williams
(BLAST &
Alignment lab)
McTavish
(Maximum Likelihood Search)
Cecile Ane
(Network models)


Second Week

Monday
(23 July)
Tuesday
(24 July)
Wednesday
(25 July)
Thursday
(26 July)
Friday
(27 July)
Saturday
(28 July)
Sunday
(29 July)
09:00-10:30 Bielawski
(Drift, selection & codon models)
Laura Eme
(Substitution models for proteins)
Beerli
(Introduction to the Coalescence)
Weisrock
(species delimitation and lineage sorting)
Edwards
(Multilocus phylogeography and phylogenetics)
Meehan
(Phylodynamics: the use of phylogeny in epidemiology)
10:30-12:00 Bielawski
(Statistical analyses)

(Phenomenologcial load)

Laura Eme
(Multi-gene phylogenetics:
methods & applications)
Kubatko
(Species Tree Estimation)
dos Reis
(Bayesian species delimitation)
Edwards
(Multilocus phylogeography and phylogenetics)
Meehan
(Participant discussions)
12:00-14:00 Lunch break
14:00-15:30 Chang
(Protein evolution & ancestral reconstruction)
Bui Quang Minh
(IQ-TREE)
Kubatko/Swofford
(Species Tree Lab I)
dos Reis
(BPP Tutorial)
Edwards
(Species Tree Lab II)
Open lab
15:30-17:00 Chang
(Adaptive protein evolution)
Bui Quang Minh
(IQ-TREE)
Beerli
(Extensions to coalescence)
Weisrock
(Intro to RADseq)
Meehan
(Species Tree Lab III: *BEAST2)
Open lab
17:00-19:00 Dinner break
19:00-20:30 Bielawski
(LINK)
Course dinner party
Lobster Boil, Terrace
Starts at 6pm
Beerli
( migrate tutorial)
Eaton
(pyrad and RADseq analysis)
Knowles
(Evolutionary applications of genomic data)
20:30-22:00 Bielawski
(LINK)
Course dinner party Beerli
( migrate tutorial)
Eaton
(pyrad and RADseq analysis)
Knowles
(Evolutionary applications of genomic data)


TEMP:

Holder        
(Branch support & tree tests) Heath
(Integrative Bayesian Analyses) Heath
(Divergence-time estimation and Biogeography]) Heath
(RevBayes) Heath
(RevBayes)