Difference between revisions of "Schedule"

From MolEvol
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| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''    <br/>([https://peterbeerli.com/workshops/mbl/2016/talk1.pdf Introduction to the Coalescence])<br/>   
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''    <br/>([https://peterbeerli.com/workshops/mbl/2016/talk1.pdf Introduction to the Coalescence])<br/>   
| align="center" width="13.5%" | '''[[David Weisrock|Weisrock]]'''     <br/>([[:file:Weisrock_WH_species_delimitation.pdf |species delimitation and lineage sorting]])
+
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''       <br/>(Divergence-time estimation)
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
 
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''    <br/>(Phylodynamics: the use of phylogeny in epidemiology)
 
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''    <br/>(Phylodynamics: the use of phylogeny in epidemiology)
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| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
| align="center" width="13.5%" | '''[[Mario dos Reis|dos Reis]]''' <br/>(Bayesian species delimitation)
+
| align="center" width="13.5%" | '''[[Michael Landis|Landis]]'''       <br/>(Historical Biogeography <br/>Intro: RevBayes/Graph. Models )
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
 
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''    <br/>(Participant discussions)
 
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''    <br/>(Participant discussions)
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| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
| align="center" width="13.5%" | '''[[Mario dos Reis|dos Reis]]''' <br/>(BPP Tutorial)  
+
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''       <br/>(Divergence-time estimation lab)
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]''' <br/>([https://molevol.mbl.edu/index.php/Edwards_lab_notes Species Tree Lab II])<br/>
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]''' <br/>([https://molevol.mbl.edu/index.php/Edwards_lab_notes Species Tree Lab II])<br/>
 
| align="center" width="13.5%" | '''Open lab'''
 
| align="center" width="13.5%" | '''Open lab'''
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| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extensions to coalescence])
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extensions to coalescence])
| align="center" width="13.5%" | '''[[David Weisrock|Weisrock]]''' <br/>([[:file:Weisrock_WH_RADseq.pdf |Intro to RADseq]])
+
| align="center" width="13.5%" | '''[[Michael Landis|Landis]]'''       <br/>(Rev Bayes Biogeography lab)
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''<br/>(Species Tree Lab III: *BEAST2)<br/>
+
| align="center" width="13.5%" | '''Open lab'''
 
| align="center" width="13.5%" | '''Open lab'''
 
| align="center" width="13.5%" | '''Open lab'''
 
|-
 
|-
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| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
| align="center" width="13.5%" | '''[[Deren Eaton|Eaton]]''' <br/>(pyrad and RADseq analysis)
 
 
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
 
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
 +
| align="center" width="13.5%" | '''[[Anne Yoder|Yoder]]''' <br/>(Evolutionary applications of genomic data)
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
|-
 
|-
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| align="center" width="5%" style="background:#DCDCDC"|   
 
| align="center" width="5%" style="background:#DCDCDC"|   
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
| align="center" width="13.5%" | '''[[Deren Eaton|Eaton]]''' <br/>(pyrad and RADseq analysis)
+
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
+
| align="center" width="13.5%" | '''[[Anne Yoder|Yoder]]''' <br/>(Evolutionary applications of genomic data)
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
|-
 
|-
 
|}
 
|}
 
<br/>
 
<br/>
 
TEMP:
 
'''[[MarkHolder|Holder]]'''        <br/>(Branch support & tree tests)
 
'''[[Tracy Heath|Heath]]'''      <br/>(Integrative Bayesian Analyses)
 
'''[[Tracy Heath|Heath]]'''      <br/>(Divergence-time estimation and Biogeography])
 
'''[[Tracy Heath|Heath]]'''        <br/>([https://molevol.mbl.edu/index.php/Total-evidence_analysis_in_RevBayes RevBayes])
 
'''[[Tracy Heath|Heath]]'''        <br/>([https://molevol.mbl.edu/index.php/Total-evidence_analysis_in_RevBayes RevBayes])
 

Revision as of 15:39, 2 January 2018

How to prepare for the Workshop on Molecular Evolution

Please download and install the software listed here: Downloads

***THE BELOW SCHEDULE FOR 2018 IS UNDER DEVELOPMENT***

Opening Activities: 7 PM Thursday, July 19th, Reception in the Meigs Room in the Swope Building

All morning sessions are in Rowe, afternoons and evenings will be in room G70 of the Loeb building

Group photo: Tuesday July 24 at 10:30 (tentative) outside of Rowe building

First Week

Thursday
(19 July)
Friday
(20 July)
Saturday
(21 July)
Sunday
(22 July)
09:00-10:30 Bielawski
(Welcome &
1 min Student Presentations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
10:30-12:00 Holder
(Phylogenetic considerations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
12:00-14:00 Lunch break
14:00-15:30 Dunn
(Phylogenomics & methods)
Swofford
(Model selection)
Huelsenbeck
(Simulation lab++)
15:30-17:00 Dunn
(Phylogenomics & methods)
Swofford
(PAUP)
Huelsenbeck
(Why I like ML & Bayes)
17:00-19:00 Dinner break
19:00-20:30 Welcome & opening reception
Swope Terrace
Williams
Intro computer lab
McTavish
(Maximum likelihood tree searching)
Cecile Ane
(Network models)
20:30-22:00 Opening reception
Swope Terrace
Williams
(BLAST &
Alignment lab)
McTavish
(Maximum Likelihood Search)
Cecile Ane
(Network models)


Second Week

Monday
(23 July)
Tuesday
(24 July)
Wednesday
(25 July)
Thursday
(26 July)
Friday
(27 July)
Saturday
(28 July)
Sunday
(29 July)
09:00-10:30 Bielawski
(Drift, selection & codon models)
Laura Eme
(Substitution models for proteins)
Beerli
(Introduction to the Coalescence)
Heath
(Divergence-time estimation)
Edwards
(Multilocus phylogeography and phylogenetics)
Meehan
(Phylodynamics: the use of phylogeny in epidemiology)
10:30-12:00 Bielawski
(Statistical analyses)

(Phenomenologcial load)

Laura Eme
(Multi-gene phylogenetics:
methods & applications)
Kubatko
(Species Tree Estimation)
Landis
(Historical Biogeography
Intro: RevBayes/Graph. Models )
Edwards
(Multilocus phylogeography and phylogenetics)
Meehan
(Participant discussions)
12:00-14:00 Lunch break
14:00-15:30 Chang
(Protein evolution & ancestral reconstruction)
Bui Quang Minh
(IQ-TREE)
Kubatko/Swofford
(Species Tree Lab I)
Heath
(Divergence-time estimation lab)
Edwards
(Species Tree Lab II)
Open lab
15:30-17:00 Chang
(Adaptive protein evolution)
Bui Quang Minh
(IQ-TREE)
Beerli
(Extensions to coalescence)
Landis
(Rev Bayes Biogeography lab)
Open lab Open lab
17:00-19:00 Dinner break
19:00-20:30 Bielawski
(LINK)
Course dinner party
Lobster Boil, Terrace
Starts at 6pm
Beerli
( migrate tutorial)
Knowles
(Evolutionary applications of genomic data)
Yoder
(Evolutionary applications of genomic data)
20:30-22:00 Bielawski
(LINK)
Course dinner party Beerli
( migrate tutorial)
Knowles
(Evolutionary applications of genomic data)
Yoder
(Evolutionary applications of genomic data)