Difference between revisions of "Schedule"

From MolEvol
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| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''19:00-20:30'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''19:00-20:30'''
 
| align="center" width="14.3%" style="background:#F2E0CE" | '''Welcome & opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Terrace]]'''
 
| align="center" width="14.3%" style="background:#F2E0CE" | '''Welcome & opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Terrace]]'''
| align="center" width="14.3%" | '''[[Williams]]'''                          <br/> [https://molevol.mbl.edu/index.php/Computer_lab_introduction '''Intro computer lab''']
+
| align="center" width="14.3%" | '''[[Rachel Williams|Williams]]'''                          <br/> [https://molevol.mbl.edu/index.php/Computer_lab_introduction '''Intro computer lab''']
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://molevol.mbl.edu/images/d/d5/ML_search.pdf Maximum likelihood tree searching])
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://molevol.mbl.edu/images/d/d5/ML_search.pdf Maximum likelihood tree searching])
| align="center" width="14.3%" | '''[[Cecile Ane]]'''  <br/>(Network models)  
+
| align="center" width="14.3%" | '''[[Cecile Ane|Cecile Ane]]'''  <br/>(Network models)  
 
|-
 
|-
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''20:30-22:00'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''20:30-22:00'''
 
| align="center" width="14.3%"  style="background:#F2E0CE"  |  '''Opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Terrace]]'''
 
| align="center" width="14.3%"  style="background:#F2E0CE"  |  '''Opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Terrace]]'''
| align="center" width="14.3%" | '''[[Williams]]'''  <br/>(BLAST &<br/> Alignment lab)
+
| align="center" width="14.3%" | '''[[Rachel Williams|Williams]]'''  <br/>(BLAST &<br/> Alignment lab)
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://mctavishlab.github.io/MLsearchLab Maximum Likelihood Search])
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://mctavishlab.github.io/MLsearchLab Maximum Likelihood Search])
| align="center" width="14.3%" | '''[[Cecile Ane]]'''  <br/>(Network models)  
+
| align="center" width="14.3%" | '''[[Cecile Ane|Cecile Ane]]'''  <br/>(Network models)  
 
|-
 
|-
 
|}
 
|}
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| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''09:00-10:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''09:00-10:30'''
 
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''    <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Parts1and2.pdf Drift, selection & codon models])
 
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''    <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Parts1and2.pdf Drift, selection & codon models])
| align="center" width="13.5%" | '''[[Laura Eme]]'''      <br/>(Substitution models for proteins)
+
| align="center" width="13.5%" | '''[[Laura Eme|Laura Eme]]'''      <br/>(Substitution models for proteins)
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''    <br/>([https://peterbeerli.com/workshops/mbl/2016/talk1.pdf Introduction to the Coalescence])<br/>   
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''    <br/>([https://peterbeerli.com/workshops/mbl/2016/talk1.pdf Introduction to the Coalescence])<br/>   
 
| align="center" width="13.5%" |  '''[[Tracy Heath|Heath]]'''      <br/>(Divergence-time estimation)
 
| align="center" width="13.5%" |  '''[[Tracy Heath|Heath]]'''      <br/>(Divergence-time estimation)
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''     <br/>(Phylodynamics: the use of phylogeny in epidemiology)
+
| align="center" width="13.5%" | '''Workshop faculty'''     <br/>(TBA)
 
|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''10:30-12:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''10:30-12:00'''
 
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''<br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part3.pdf Statistical analyses])
 
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''<br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part3.pdf Statistical analyses])
 
([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part4.pdf Phenomenologcial load])
 
([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part4.pdf Phenomenologcial load])
| align="center" width="13.5%" | '''[[Laura Eme]]'''      <br/>(Multi-gene phylogenetics:<br/>methods & applications)
+
| align="center" width="13.5%" | '''[[Laura Eme|Laure Eme]]'''      <br/>(Multi-gene phylogenetics:<br/>methods & applications)
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
 
| align="center" width="13.5%" |  '''[[Michael Landis|Landis]]'''      <br/>(Historical Biogeography <br/>Intro: RevBayes/Graph. Models )
 
| align="center" width="13.5%" |  '''[[Michael Landis|Landis]]'''      <br/>(Historical Biogeography <br/>Intro: RevBayes/Graph. Models )
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''    <br/>(Participant discussions)
+
| align="center" width="13.5%" | '''Workshop faculty'''    <br/>(Participant discussions)
 
|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''12:00-14:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''12:00-14:00'''
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| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''14:00-15:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''14:00-15:30'''
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/3/33/Protein_Evolution_%26_Ancestral_Reconstruction.pdf Protein evolution & ancestral reconstruction])
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/3/33/Protein_Evolution_%26_Ancestral_Reconstruction.pdf Protein evolution & ancestral reconstruction])
| align="center" width="13.5%" | '''[[Bui Quang Minh ]]'''<br/>(IQ-TREE)
+
| align="center" width="13.5%" | '''[[Bui Quang Minh|Minh]]'''<br/>(IQ-TREE)
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
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| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''15:30-17:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''15:30-17:00'''
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/a/a3/Adaptive_Protein_Evolution.pdf Adaptive protein evolution])
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/a/a3/Adaptive_Protein_Evolution.pdf Adaptive protein evolution])
| align="center" width="13.5%" | '''[[Bui Quang Minh ]]'''<br/>(IQ-TREE)
+
| align="center" width="13.5%" | '''[[Bui Quang Minh|Minh]]'''<br/>(IQ-TREE)
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extensions to coalescence])
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extensions to coalescence])
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| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
 
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
 
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
| align="center" width="13.5%" | '''[[Anne Yoder|Yoder]]''' <br/>(Evolutionary applications of genomic data)
+
| align="center" width="13.5%" | '''[[Anne Yoder|Yoder]]''' <br/>("Capstone lecture")
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
|-
 
|-
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| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
 
| align="center" width="13.5%" |  '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
 
| align="center" width="13.5%" |  '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
| align="center" width="13.5%" | '''[[Anne Yoder|Yoder]]''' <br/>(Evolutionary applications of genomic data)
+
| align="center" width="13.5%" | '''[[Anne Yoder|Yoder]]''' <br/>("Capstone lecture")
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
|-
 
|-
 
|}
 
|}
 
<br/>
 
<br/>

Revision as of 15:49, 2 January 2018

How to prepare for the Workshop on Molecular Evolution

Please download and install the software listed here: Downloads

***THE BELOW SCHEDULE FOR 2018 IS UNDER DEVELOPMENT***

Opening Activities: 7 PM Thursday, July 19th, Reception in the Meigs Room in the Swope Building

All morning sessions are in Rowe, afternoons and evenings will be in room G70 of the Loeb building

Group photo: Tuesday July 24 at 10:30 (tentative) outside of Rowe building

First Week

Thursday
(19 July)
Friday
(20 July)
Saturday
(21 July)
Sunday
(22 July)
09:00-10:30 Bielawski
(Welcome &
1 min Student Presentations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
10:30-12:00 Holder
(Phylogenetic considerations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
12:00-14:00 Lunch break
14:00-15:30 Dunn
(Phylogenomics & methods)
Swofford
(Model selection)
Huelsenbeck
(Simulation lab++)
15:30-17:00 Dunn
(Phylogenomics & methods)
Swofford
(PAUP)
Huelsenbeck
(Why I like ML & Bayes)
17:00-19:00 Dinner break
19:00-20:30 Welcome & opening reception
Swope Terrace
Williams
Intro computer lab
McTavish
(Maximum likelihood tree searching)
Cecile Ane
(Network models)
20:30-22:00 Opening reception
Swope Terrace
Williams
(BLAST &
Alignment lab)
McTavish
(Maximum Likelihood Search)
Cecile Ane
(Network models)


Second Week

Monday
(23 July)
Tuesday
(24 July)
Wednesday
(25 July)
Thursday
(26 July)
Friday
(27 July)
Saturday
(28 July)
Sunday
(29 July)
09:00-10:30 Bielawski
(Drift, selection & codon models)
Laura Eme
(Substitution models for proteins)
Beerli
(Introduction to the Coalescence)
Heath
(Divergence-time estimation)
Edwards
(Multilocus phylogeography and phylogenetics)
Workshop faculty
(TBA)
10:30-12:00 Bielawski
(Statistical analyses)

(Phenomenologcial load)

Laure Eme
(Multi-gene phylogenetics:
methods & applications)
Kubatko
(Species Tree Estimation)
Landis
(Historical Biogeography
Intro: RevBayes/Graph. Models )
Edwards
(Multilocus phylogeography and phylogenetics)
Workshop faculty
(Participant discussions)
12:00-14:00 Lunch break
14:00-15:30 Chang
(Protein evolution & ancestral reconstruction)
Minh
(IQ-TREE)
Kubatko/Swofford
(Species Tree Lab I)
Heath
(Divergence-time estimation lab)
Edwards
(Species Tree Lab II)
Open lab
15:30-17:00 Chang
(Adaptive protein evolution)
Minh
(IQ-TREE)
Beerli
(Extensions to coalescence)
Landis
(Rev Bayes Biogeography lab)
Open lab Open lab
17:00-19:00 Dinner break
19:00-20:30 Bielawski
(LINK)
Course dinner party
Lobster Boil, Terrace
Starts at 6pm
Beerli
( migrate tutorial)
Knowles
(Evolutionary applications of genomic data)
Yoder
("Capstone lecture")
20:30-22:00 Bielawski
(LINK)
Course dinner party Beerli
( migrate tutorial)
Knowles
(Evolutionary applications of genomic data)
Yoder
("Capstone lecture")