Difference between revisions of "Schedule"

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| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''19:00-20:30'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''19:00-20:30'''
 
| align="center" width="14.3%" style="background:#F2E0CE" | '''Welcome & opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Bldg.]]'''
 
| align="center" width="14.3%" style="background:#F2E0CE" | '''Welcome & opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Bldg.]]'''
| align="center" width="14.3%" | '''[[Rachel Williams|Williams]]'''                          <br/> [https://molevol.mbl.edu/index.php/Computer_lab_introduction '''Intro computer lab''']
+
| align="center" width="14.3%" | '''[[Rachel Williams|Rachel Williams]]'''                          <br/> [https://molevol.mbl.edu/index.php/Computer_lab_introduction '''Intro computer lab''']
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://molevol.mbl.edu/images/d/d5/ML_search.pdf Maximum likelihood tree searching])
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://molevol.mbl.edu/images/d/d5/ML_search.pdf Maximum likelihood tree searching])
 
| align="center" width="14.3%" | '''[[Cecile Ane|Cecile Ane]]'''  <br/>(Network models)  
 
| align="center" width="14.3%" | '''[[Cecile Ane|Cecile Ane]]'''  <br/>(Network models)  
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| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''20:30-22:00'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''20:30-22:00'''
 
| align="center" width="14.3%"  style="background:#F2E0CE"  |  '''Opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Bldg.]]'''
 
| align="center" width="14.3%"  style="background:#F2E0CE"  |  '''Opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Bldg.]]'''
| align="center" width="14.3%" | '''[[Rachel Williams|Williams]]'''  <br/>(BLAST &<br/> Alignment lab)
+
| align="center" width="14.3%" | '''[[Rachel Williams|Rachel Williams]]'''  <br/>(BLAST &<br/> Alignment lab)
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://mctavishlab.github.io/MLsearchLab Ascertainment bias & partition models])
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://mctavishlab.github.io/MLsearchLab Ascertainment bias & partition models])
 
| align="center" width="14.3%" | '''[[Cecile Ane|Cecile Ane]]'''  <br/>(Network models)  
 
| align="center" width="14.3%" | '''[[Cecile Ane|Cecile Ane]]'''  <br/>(Network models)  
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| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''<br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part3.pdf Statistical analyses])
 
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''<br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part3.pdf Statistical analyses])
 
([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part4.pdf Phenomenologcial load])
 
([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part4.pdf Phenomenologcial load])
| align="center" width="13.5%" | '''[[Laura Eme|Laure Eme]]'''      <br/>(Multi-gene phylogenetics:<br/>methods & applications)
+
| align="center" width="13.5%" | '''[[Laura Eme|Laura Eme]]'''      <br/>(Multi-gene phylogenetics:<br/>methods & applications)
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
Line 109: Line 109:
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''14:00-15:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''14:00-15:30'''
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/3/33/Protein_Evolution_%26_Ancestral_Reconstruction.pdf Protein evolution & ancestral reconstruction])
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/3/33/Protein_Evolution_%26_Ancestral_Reconstruction.pdf Protein evolution & ancestral reconstruction])
| align="center" width="13.5%" | '''[[Bui Quang Minh|Minh]]'''<br/>(IQ-TREE)
+
| align="center" width="13.5%" | '''[[Bui Quang Minh|Bui Quang Minh]]'''<br/>(IQ-TREE)
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
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| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''15:30-17:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''15:30-17:00'''
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/a/a3/Adaptive_Protein_Evolution.pdf Adaptive protein evolution])
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/a/a3/Adaptive_Protein_Evolution.pdf Adaptive protein evolution])
| align="center" width="13.5%" | '''[[Bui Quang Minh|Minh]]'''<br/>(IQ-TREE)
+
| align="center" width="13.5%" | '''[[Bui Quang Minh|Bui Quang Minh]]'''<br/>(IQ-TREE)
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extension of the basic coalescent])
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extension of the basic coalescent])

Revision as of 16:38, 3 January 2018

How to prepare for the Workshop on Molecular Evolution

Please download and install the software listed here: Downloads

***THE BELOW SCHEDULE FOR 2018 IS UNDER DEVELOPMENT***

Opening Activities: 7 PM Thursday, July 19th, Reception in the Meigs Room in the Swope Building

All morning sessions are in Rowe, afternoons and evenings will be in room G70 of the Loeb building

Group photo: Tuesday July 24 at 10:30 (tentative) outside of Rowe building

First Week

Thursday
(19 July)
Friday
(20 July)
Saturday
(21 July)
Sunday
(22 July)
09:00-10:30 Bielawski
(Welcome &
1 min Student Presentations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
10:30-12:00 Holder
(Phylogenetic considerations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
12:00-14:00 Lunch break
14:00-15:30 Dunn
(Phylogenomics & methods)
Swofford
(Model selection)
Huelsenbeck
(Simulation lab++)
15:30-17:00 Dunn
(Phylogenomics & methods)
Swofford
(PAUP)
Huelsenbeck
(Why I like ML & Bayes)
17:00-19:00 Dinner break
19:00-20:30 Welcome & opening reception
Swope Bldg.
Rachel Williams
Intro computer lab
McTavish
(Maximum likelihood tree searching)
Cecile Ane
(Network models)
20:30-22:00 Opening reception
Swope Bldg.
Rachel Williams
(BLAST &
Alignment lab)
McTavish
(Ascertainment bias & partition models)
Cecile Ane
(Network models)


Second Week

Monday
(23 July)
Tuesday
(24 July)
Wednesday
(25 July)
Thursday
(26 July)
Friday
(27 July)
Saturday
(28 July)
Sunday
(29 July)
09:00-10:30 Bielawski
(Drift, selection & codon models)
Laura Eme
(Substitution models for proteins)
Beerli
(Introduction to the Coalescent)
Heath
(Divergence-time estimation)
Edwards
(Multilocus phylogeography and phylogenetics)
Workshop faculty
(TBA)
10:30-12:00 Bielawski
(Statistical analyses)

(Phenomenologcial load)

Laura Eme
(Multi-gene phylogenetics:
methods & applications)
Kubatko
(Species Tree Estimation)
Landis
(Historical Biogeography
Intro: RevBayes/Graph. Models )
Edwards
(Multilocus phylogeography and phylogenetics)
Workshop faculty
(Participant discussions)
12:00-14:00 Lunch break
14:00-15:30 Chang
(Protein evolution & ancestral reconstruction)
Bui Quang Minh
(IQ-TREE)
Kubatko/Swofford
(Species Tree Lab I)
Heath
(Divergence-time estimation lab)
Edwards
(Species Tree Lab II)
Open lab
15:30-17:00 Chang
(Adaptive protein evolution)
Bui Quang Minh
(IQ-TREE)
Beerli
(Extension of the basic coalescent)
Landis
(Rev Bayes Biogeography lab)
Open lab Open lab
17:00-19:00 Dinner break
19:00-20:30 Bielawski
(PAML lab)
(Lab slides)
Course dinner party
Lobster Boil, Terrace
Starts at 6pm
Beerli
( migrate tutorial)
Knowles
(Evolutionary applications of genomic data)
Yoder
("Capstone lecture")
20:30-22:00 Bielawski
(Additional resources)
(Advanced lab)
Course dinner party Beerli
( migrate tutorial)
Knowles
(Evolutionary applications of genomic data)
Yoder
("Capstone lecture")