Difference between revisions of "Schedule"

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===[[How to prepare for the Workshop on Molecular Evolution]]===
 
===[[How to prepare for the Workshop on Molecular Evolution]]===
 
===Please download and install the software listed here: [https://molevol.mbl.edu/index.php/Computer_lab_introduction#Downloads Downloads]===
 
===Please download and install the software listed here: [https://molevol.mbl.edu/index.php/Computer_lab_introduction#Downloads Downloads]===
===Fill out this [https://docs.google.com/spreadsheets/d/1rXGRJ3GOkqfiebZsaK3pBYZW3AE8NoL40XCiGQOTmvQ/edit?usp=sharing  Google Doc] to order your 2017 t-shirt!!!===
 
  
Shirts from previous years [https://molevol.mbl.edu/index.php/Previous_MBL_Molecular_Evolution_Workshop_T-Shirts here]!
+
===Opening Activities: 7 PM Thursday, July 19th, Reception in the Meigs Room in the [[:file:Swope-with-Eel-pond.jpg|Swope Building]] ===
  
==='''Vote for your favorite!'''===
+
===All morning sessions are in [[:file:rowe.jpg|Rowe]], afternoons and evenings will be in room G70 of the [[:file:Loeb.jpeg|Loeb building]] ===
 
 
Use the following link to vote for your favorite t-shirt design: [https://doodle.com/poll/67kgy72b3rau3yuz  Click here to vote!]
 
----
 
 
 
===Opening Activities: 7 PM Thursday, July 20th, Computer orientation lab & Opening Reception===
 
  
===All morning sessions are in [[:file:rowe.jpg|Rowe]], afternoons and evenings will be in room G70 of the [[:file:Loeb.jpeg|Loeb building]] ===
+
===Group photo: Tuesday July 24 at 10:30 (tentative) outside of Rowe building===
  
===Group photo: Tuesday July 25 at 10:30 outside of Rowe building===
 
  
 
== First Week ==
 
== First Week ==
  
{| border="1" width="57%"
+
{| border="1" width="65%"
 
|- style="background:SteelBlue"
 
|- style="background:SteelBlue"
 
| align="center" width="14.3%" |  
 
| align="center" width="14.3%" |  
| align="center" width="14.3%" style="color:white" | '''Thursday'''<br/>(20 July)
+
| align="center" width="14.3%" style="color:white" | '''Thursday'''<br/>(19 July)
| align="center" width="14.3%" style="color:white" | '''Friday'''<br/>(21 July)
+
| align="center" width="14.3%" style="color:white" | '''Friday'''<br/>(20 July)
| align="center" width="14.3%" style="color:white" | '''Saturday'''<br/>(22 July)
+
| align="center" width="14.3%" style="color:white" | '''Saturday'''<br/>(21 July)
| align="center" width="14.3%" style="color:white" | '''Sunday'''<br/>(23 July)
+
| align="center" width="14.3%" style="color:white" | '''Sunday'''<br/>(22 July)
 
|-
 
|-
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''09:00-10:30'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''09:00-10:30'''
 
| align="center" width="14.3%" style="background:#DCDCDC" |
 
| align="center" width="14.3%" style="background:#DCDCDC" |
| align="center" width="14.3%" | '''[[Anne Yoder|Yoder]]'''      <br/>(Welcome, Introduction &<br/> '''1 min Student Presentations''')
+
| align="center" width="14.3%" | '''[[Bielawski|Bielawski]]'''      <br/>(Welcome &<br/> '''1 min Student Presentations''')
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(ML phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(ML phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(Bayesian phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(Bayesian phylogenetics)
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| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''10:30-12:00'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''10:30-12:00'''
 
| align="center" width="14.3%" style="background:#DCDCDC" |
 
| align="center" width="14.3%" style="background:#DCDCDC" |
| align="center" width="14.3%" | '''[[David Hillis|Hillis]]'''  <br/>(Power, efficiency, consistency)
+
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''  <br/>(Phylogenetic considerations)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(ML phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(ML phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(Bayesian phylogenetics)
 
| align="center" width="14.3%" | '''[[Paul Lewis|Lewis]]'''      <br/>(Bayesian phylogenetics)
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|-
 
|-
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''19:00-20:30'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''19:00-20:30'''
| align="center" width="14.3%" | [https://molevol.mbl.edu/index.php/Computer_lab_introduction '''Computer lab, room G70 Loeb (basement)''']
+
| align="center" width="14.3%" style="background:#F2E0CE" | '''Welcome & opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Bldg.]]'''
| align="center" width="14.3%" | '''[[William_Pearson|Pearson]]'''       <br/>(Sequence homology)
+
| align="center" width="14.3%" | '''[[Rachel Williams|Rachel Williams]]'''                         <br/> [https://molevol.mbl.edu/index.php/Computer_lab_introduction '''Intro computer lab''']
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''             <br/>(Branch support & tree tests)
 
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://molevol.mbl.edu/images/d/d5/ML_search.pdf Maximum likelihood tree searching])
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''  <br/>([https://molevol.mbl.edu/images/d/d5/ML_search.pdf Maximum likelihood tree searching])
 +
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''      <br/>(Divergence-time estimation lab)
 
|-
 
|-
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''20:30-22:00'''
 
| align="center" width="14.3%" height="30" style="background:#c8ccd1"  | '''20:30-22:00'''
| align="center" width="14.3%" |  '''Opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Terrace]]'''
+
| align="center" width="14.3%" style="background:#F2E0CE"  |  '''Opening reception''' <br/>'''[[:file:swope_terrace.jpg|Swope Bldg.]]'''
| align="center" width="14.3%" | '''[[William_Pearson|Pearson]]'''       <br/>(FASTA/BLAST lab)
+
| align="center" width="14.3%" | '''[[Rachel Williams|Rachel Williams]]'''   <br/>(BLAST &<br/> Alignment lab)
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''             <br/>(Branch support & tree tests)
+
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''   <br/>([https://mctavishlab.github.io/MLsearchLab Ascertainment bias & partition models])
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''   <br/>([https://mctavishlab.github.io/MLsearchLab Maximum Likelihood Search])
+
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''       <br/>(Divergence-time estimation lab)  
 
|-
 
|-
 
|}
 
|}
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|- style="background:SteelBlue"
 
|- style="background:SteelBlue"
 
| align="center" width="13.5%" |  
 
| align="center" width="13.5%" |  
| align="center" width="13.5%" style="color:white" | '''Monday'''<br/>(24 July)
+
| align="center" width="13.5%" style="color:white" | '''Monday'''<br/>(23 July)
| align="center" width="13.5%" style="color:white" | '''Tuesday'''<br/>(25 July)
+
| align="center" width="13.5%" style="color:white" | '''Tuesday'''<br/>(24 July)
| align="center" width="5%" style="color:white" | '''Wednesday'''<br/>(26 July)
+
| align="center" width="5%" style="color:white" | '''Wednesday'''<br/>(25 July)
| align="center" width="13.5%" style="color:white" | '''Thursday'''<br/>(27 July)
+
| align="center" width="13.5%" style="color:white" | '''Thursday'''<br/>(26 July)
| align="center" width="13.5%" style="color:white" | '''Friday'''<br/>(28 July)
+
| align="center" width="13.5%" style="color:white" | '''Friday'''<br/>(27 July)
| align="center" width="13.5%" style="color:white" | '''Saturday'''<br/>(29 July)
+
| align="center" width="13.5%" style="color:white" | '''Saturday'''<br/>(28 July)
| align="center" width="13.5%" style="color:white" | '''Sunday'''<br/>(30 July)
+
| align="center" width="13.5%" style="color:white" | '''Sunday'''<br/>(29 July)
 
|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''09:00-10:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''09:00-10:30'''
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''    <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Parts1and2.pdf Codon models, Parts1and2])
+
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''    <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Parts1and2.pdf Drift, selection & codon models])
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''      <br/>(Integrative Bayesian Analyses)
+
| align="center" width="13.5%" | '''[[Laura Eme|Laura Eme]]'''      <br/>(Substitution models for proteins)
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''    <br/>([https://peterbeerli.com/workshops/mbl/2016/talk1.pdf Introduction to the Coalescence])<br/>   
+
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''    <br/>([https://peterbeerli.com/workshops/mbl/2016/talk1.pdf Introduction to the Coalescent])<br/>   
| align="center" width="13.5%" | '''[[David Weisrock|Weisrock]]'''     <br/>([[:file:Weisrock_WH_species_delimitation.pdf |species delimitation and lineage sorting]])
+
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
+
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''  <br/>(Multilocus phylogeography and phylogenetics)
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''     <br/>(Phylodynamics: the use of phylogeny in epidemiology)
+
| align="center" width="13.5%" | [https://molevol.mbl.edu/index.php/Faculty '''Workshop faculty'''] <br/>(TBA)
 
|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''10:30-12:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''10:30-12:00'''
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''<br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part3.pdf Codon models, Part3])
+
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''<br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part3.pdf Statistical analyses])
([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part4.pdf Part4])
+
([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab_v2/slides/WH2017_Part4.pdf Phenomenologcial load])
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''<br/>(Divergence-time estimation and Biogeography])
+
| align="center" width="13.5%" | '''[[Laura Eme|Laura Eme]]'''       <br/>(Multi-gene phylogenetics:<br/>methods & applications)
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="5%" style="background:#DCDCDC"|  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''  <br/>(Species Tree Estimation)
| align="center" width="13.5%" | '''[[Mario dos Reis|dos Reis]]''' <br/>(Bayesian species delimitation)
+
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]''' <br/>(Multilocus phylogeography and phylogenetics)
+
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]'''   <br/>(Multilocus phylogeography and phylogenetics)
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''    <br/>(Participant discussions)
+
| align="center" width="13.5%" | '''Workshop faculty'''    <br/>(Participant discussions)
 
|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''12:00-14:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''12:00-14:00'''
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| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''14:00-15:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''14:00-15:30'''
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/3/33/Protein_Evolution_%26_Ancestral_Reconstruction.pdf Protein evolution & ancestral reconstruction])
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/3/33/Protein_Evolution_%26_Ancestral_Reconstruction.pdf Protein evolution & ancestral reconstruction])
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''<br/>([https://molevol.mbl.edu/index.php/Total-evidence_analysis_in_RevBayes RevBayes])
+
| align="center" width="13.5%" | '''[[Bui Quang Minh|Bui Quang Minh]]'''<br/>(IQ-TREE)
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
 
| align="center" width="13.5%" | '''[[Laura Kubatko|Kubatko]]'''/'''[[David Swofford|Swofford]]''' <br/>(Species Tree Lab I)<br/>
| align="center" width="13.5%" | '''[[Mario dos Reis|dos Reis]]''' <br/>(BPP Tutorial)  
+
| align="center" width="13.5%" | '''[[Cecile Ane|Cecile Ane]]'''   <br/>(Network models)
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]''' <br/>([https://molevol.mbl.edu/index.php/Edwards_lab_notes Species Tree Lab II])<br/>
 
| align="center" width="13.5%" | '''[[Scott Edwards|Edwards]]''' <br/>([https://molevol.mbl.edu/index.php/Edwards_lab_notes Species Tree Lab II])<br/>
| align="center" width="13.5%" | '''Open lab'''
+
| align="center" width="13.5%"  style="background:#F2FFE6" | '''Open lab'''
 
|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''15:30-17:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''15:30-17:00'''
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/a/a3/Adaptive_Protein_Evolution.pdf Adaptive protein evolution])
 
| align="center" width="13.5%" | '''[[Belinda Chang|Chang]]'''<br/>([https://molevol.mbl.edu/images/a/a3/Adaptive_Protein_Evolution.pdf Adaptive protein evolution])
| align="center" width="13.5%" | '''[[Tracy Heath|Heath]]'''<br/>([https://molevol.mbl.edu/index.php/Total-evidence_analysis_in_RevBayes RevBayes])
+
| align="center" width="13.5%" | '''[[Bui Quang Minh|Bui Quang Minh]]'''<br/>(IQ-TREE)
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extensions to coalescence])
+
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]'''<br/>([https://peterbeerli.com/workshops/mbl/2016/talk2.pdf Extension of the basic coalescent])
| align="center" width="13.5%" | '''[[David Weisrock|Weisrock]]''' <br/>([[:file:Weisrock_WH_RADseq.pdf |Intro to RADseq]])
+
| align="center" width="13.5%" | '''[[Cecile Ane|Cecile Ane]]'''   <br/>(Network models)
| align="center" width="13.5%" | '''[[Conor Meehan|Meehan]]'''<br/>(Species Tree Lab III: *BEAST2)<br/>
+
| align="center" width="13.5%"  style="background:#F2FFE6" | '''Open lab'''
| align="center" width="13.5%" | '''Open lab'''
+
| align="center" width="13.5%"  style="background:#F2FFE6" | '''Open lab'''
 
|-
 
|-
 
|-
 
|-
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|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''19:00-20:30'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''19:00-20:30'''
| align="center" width="13.5%" | '''Open lab'''
+
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]''' <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab/lab.html PAML lab]) <br/>([http://awarnach.mathstat.dal.ca/~joeb/PAML_lab/resources/pamlDEMO_2slidePage.pdf Lab slides])
 
| align="center" width="13.5%" style="background:#F2E0CE" | '''Course dinner party'''<br/>Lobster Boil, Terrace<br/>Starts at 6pm
 
| align="center" width="13.5%" style="background:#F2E0CE" | '''Course dinner party'''<br/>Lobster Boil, Terrace<br/>Starts at 6pm
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="5%" style="background:#DCDCDC" |  
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
 
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
| align="center" width="13.5%" | '''[[Deren Eaton|Eaton]]''' <br/>(pyrad and RADseq analysis)
+
| align="center" width="13.5%" | '''[[Michael Landis|Landis]]'''       <br/>(Historical Biogeography <br/>Intro: RevBayes/Graph. Models )
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
+
| align="center" width="13.5%" | '''[[Anne Yoder|Yoder]]''' <br/>("Capstone lecture")
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
|-
 
|-
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''20:30-22:00'''
 
| align="center" width="13.5%" height="30" style="background:#c8ccd1" | '''20:30-22:00'''
| align="center" width="13.5%" | '''Open lab'''
+
| align="center" width="13.5%" | '''[[Bielawski|Bielawski]]'''     <br/>([https://molevol.mbl.edu/index.php/PAML_notes Additional resources]) <br/>([https://bitbucket.org/EvoWorks/protocol-inference-of-episodic-selection/downloads/ Advanced lab])
 
| align="center" width="13.5%" style="background:#F2E0CE" |  '''Course dinner party'''
 
| align="center" width="13.5%" style="background:#F2E0CE" |  '''Course dinner party'''
 
| align="center" width="5%" style="background:#DCDCDC"|   
 
| align="center" width="5%" style="background:#DCDCDC"|   
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])<br/>
+
| align="center" width="13.5%" | '''[[Peter Beerli|Beerli]]''' <br/>( [http://peterbeerli.com/workshops/mbl/2017/tutorial/ migrate tutorial])
| align="center" width="13.5%" | '''[[Deren Eaton|Eaton]]''' <br/>(pyrad and RADseq analysis)
+
| align="center" width="13.5%" | '''[[Michael Landis|Landis]]'''       <br/>(Rev Bayes Biogeography lab)
| align="center" width="13.5%" | '''[[Lacey Knowles|Knowles]]''' <br/>(Evolutionary applications of genomic data)
+
| align="center" width="13.5%" | '''[[Anne Yoder|Yoder]]''' <br/>("Capstone lecture")
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
| align="center" width="13.5%" style="background:#DCDCDC" |
 
|-
 
|-
 
|}
 
|}
 
<br/>
 
<br/>

Revision as of 19:07, 29 January 2018

How to prepare for the Workshop on Molecular Evolution

Please download and install the software listed here: Downloads

Opening Activities: 7 PM Thursday, July 19th, Reception in the Meigs Room in the Swope Building

All morning sessions are in Rowe, afternoons and evenings will be in room G70 of the Loeb building

Group photo: Tuesday July 24 at 10:30 (tentative) outside of Rowe building

First Week

Thursday
(19 July)
Friday
(20 July)
Saturday
(21 July)
Sunday
(22 July)
09:00-10:30 Bielawski
(Welcome &
1 min Student Presentations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
10:30-12:00 Holder
(Phylogenetic considerations)
Lewis
(ML phylogenetics)
Lewis
(Bayesian phylogenetics)
12:00-14:00 Lunch break
14:00-15:30 Dunn
(Phylogenomics & methods)
Swofford
(Model selection)
Huelsenbeck
(Simulation lab++)
15:30-17:00 Dunn
(Phylogenomics & methods)
Swofford
(PAUP)
Huelsenbeck
(Why I like ML & Bayes)
17:00-19:00 Dinner break
19:00-20:30 Welcome & opening reception
Swope Bldg.
Rachel Williams
Intro computer lab
McTavish
(Maximum likelihood tree searching)
Heath
(Divergence-time estimation lab)
20:30-22:00 Opening reception
Swope Bldg.
Rachel Williams
(BLAST &
Alignment lab)
McTavish
(Ascertainment bias & partition models)
Heath
(Divergence-time estimation lab)


Second Week

Monday
(23 July)
Tuesday
(24 July)
Wednesday
(25 July)
Thursday
(26 July)
Friday
(27 July)
Saturday
(28 July)
Sunday
(29 July)
09:00-10:30 Bielawski
(Drift, selection & codon models)
Laura Eme
(Substitution models for proteins)
Beerli
(Introduction to the Coalescent)
Knowles
(Evolutionary applications of genomic data)
Edwards
(Multilocus phylogeography and phylogenetics)
Workshop faculty
(TBA)
10:30-12:00 Bielawski
(Statistical analyses)

(Phenomenologcial load)

Laura Eme
(Multi-gene phylogenetics:
methods & applications)
Kubatko
(Species Tree Estimation)
Knowles
(Evolutionary applications of genomic data)
Edwards
(Multilocus phylogeography and phylogenetics)
Workshop faculty
(Participant discussions)
12:00-14:00 Lunch break
14:00-15:30 Chang
(Protein evolution & ancestral reconstruction)
Bui Quang Minh
(IQ-TREE)
Kubatko/Swofford
(Species Tree Lab I)
Cecile Ane
(Network models)
Edwards
(Species Tree Lab II)
Open lab
15:30-17:00 Chang
(Adaptive protein evolution)
Bui Quang Minh
(IQ-TREE)
Beerli
(Extension of the basic coalescent)
Cecile Ane
(Network models)
Open lab Open lab
17:00-19:00 Dinner break
19:00-20:30 Bielawski
(PAML lab)
(Lab slides)
Course dinner party
Lobster Boil, Terrace
Starts at 6pm
Beerli
( migrate tutorial)
Landis
(Historical Biogeography
Intro: RevBayes/Graph. Models )
Yoder
("Capstone lecture")
20:30-22:00 Bielawski
(Additional resources)
(Advanced lab)
Course dinner party Beerli
( migrate tutorial)
Landis
(Rev Bayes Biogeography lab)
Yoder
("Capstone lecture")