Difference between revisions of "Schedule"

From MolEvol
(Second Week)
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| align="center" width="14.3%" |  '''[[John Huelsenbeck|Huelsenbeck]]'''<br/>(Bayesian Phylogenetic Analysis)
 
| align="center" width="14.3%" |  '''[[John Huelsenbeck|Huelsenbeck]]'''<br/>(Bayesian Phylogenetic Analysis)
 
| align="center" width="14.3%" |  '''[[Bielawski|Bielawski]]'''<br/>([https://molevol.mbl.edu/index.php/PAML_notes Lab notes][http://myweb.dal.ca/js551958/PAML_lab/lab.html JB_lab])
 
| align="center" width="14.3%" |  '''[[Bielawski|Bielawski]]'''<br/>([https://molevol.mbl.edu/index.php/PAML_notes Lab notes][http://myweb.dal.ca/js551958/PAML_lab/lab.html JB_lab])
| align="center" width="14.3%" | '''[[Antonis Rokas|Rokas]]'''<br/>([http://as.vanderbilt.edu/rokaslab/lectures/EvolGenom_2015.pdf Evolutionary genomics])
+
| align="center" width="14.3%" | '''[[Casey Dunn|Dunn]]'''<br/>([ Phylogenomics: Methods and applications])
 
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''<br/>([http://phyloworks.org/workshops/divtime.html Divergence time estimation])
 
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''<br/>([http://phyloworks.org/workshops/divtime.html Divergence time estimation])
 
|-
 
|-
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| align="center" width="14.3%" | '''[[John Huelsenbeck|Huelsenbeck]]'''<br/>(Bayesian Phylogenetic Analysis)
 
| align="center" width="14.3%" | '''[[John Huelsenbeck|Huelsenbeck]]'''<br/>(Bayesian Phylogenetic Analysis)
 
| align="center" width="14.3%" | '''[[Bielawski|Bielawski]]'''<br/>([https://molevol.mbl.edu/index.php/PAML_notes Lab notes][http://myweb.dal.ca/js551958/PAML_lab/lab.html JB_lab])
 
| align="center" width="14.3%" | '''[[Bielawski|Bielawski]]'''<br/>([https://molevol.mbl.edu/index.php/PAML_notes Lab notes][http://myweb.dal.ca/js551958/PAML_lab/lab.html JB_lab])
| align="center" width="14.3%" | '''[[Antonis Rokas|Rokas]]'''<br/>([http://as.vanderbilt.edu/rokaslab/lectures/EvolGenom_2015.pdf Evolutionary genomics])
+
| align="center" width="14.3%" | '''[[Casey Dunn|Dunn]]'''<br/>([ Phylogenomics: Methods and applications])
 
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''<br/>([http://phyloworks.org/workshops/divtime.html BEAST 2])
 
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''<br/>([http://phyloworks.org/workshops/divtime.html BEAST 2])
 
|-
 
|-
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| align="center" width="14.3%" | '''[[David Swofford|Swofford]]'''<br/>( [https://molevol.mbl.edu/images/c/cd/Swofford_WH2015_modsel.pdf Model selection] )
 
| align="center" width="14.3%" | '''[[David Swofford|Swofford]]'''<br/>( [https://molevol.mbl.edu/images/c/cd/Swofford_WH2015_modsel.pdf Model selection] )
 
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''/'''[[Michael Landis|Landis]]'''<br/>[[RevBayes]]
 
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''/'''[[Michael Landis|Landis]]'''<br/>[[RevBayes]]
| align="center" width="14.3%" | ([[Open_lab |Participant analyses and discussion with workshop faculty]])
+
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''<br/>([http://phylo.bio.ku.edu/woodshole/HolderMSALectureWoodsHole2015.pdf Branch support and tests])
| align="center" width="14.3%" | '''[[Casey Dunn|Dunn]]'''<br/>([ Phylogenomics: applications])
+
| align="center" width="14.3%" |  
 
| align="center" width="14.3%" |Course dinner/party<br/>Lobster Boil; starts at 5 PM
 
| align="center" width="14.3%" |Course dinner/party<br/>Lobster Boil; starts at 5 PM
 
|-
 
|-
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| align="center" width="14.3%" | '''[[David Swofford|Swofford]]'''<br/>([https://molevol.mbl.edu/images/7/7f/Swofford_WH2015_paup_demo.pdf PAUP slides][https://molevol.mbl.edu/index.php/PAUP*_Exercise PAUP* Exercise])
 
| align="center" width="14.3%" | '''[[David Swofford|Swofford]]'''<br/>([https://molevol.mbl.edu/images/7/7f/Swofford_WH2015_paup_demo.pdf PAUP slides][https://molevol.mbl.edu/index.php/PAUP*_Exercise PAUP* Exercise])
 
| align="center" width="14.3%" |  '''[[Tracy Heath|Heath]]'''/'''[[Michael Landis|Landis]]'''<br/>[[RevBayes]]
 
| align="center" width="14.3%" |  '''[[Tracy Heath|Heath]]'''/'''[[Michael Landis|Landis]]'''<br/>[[RevBayes]]
| align="center" width="14.3%" |  ([[Open_lab |Participant analyses and discussion with workshop faculty]])
+
| align="center" width="14.3%" |  '''[[MarkHolder|Holder]]'''<br/>(Topology testing. continued)
| align="center" width="14.3%" |  '''[[Casey Dunn|Dunn]]'''<br/>([ Phylogenomics: applications])
+
| align="center" width="14.3%" |   
 
| align="center" width="14.3%" |  Course dinner/party<br/>Lobster Boil
 
| align="center" width="14.3%" |  Course dinner/party<br/>Lobster Boil
 
|-
 
|-
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| align="center" width="14.3%" height="30" | 19:00-20:30
 
| align="center" width="14.3%" height="30" | 19:00-20:30
 
| align="center" width="14.3%" | '''[[Peter Beerli|Beerli]]''' <br/>(Migrate tutorial)<br/>
 
| align="center" width="14.3%" | '''[[Peter Beerli|Beerli]]''' <br/>(Migrate tutorial)<br/>
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''<br/>(Topology testing. continued)
+
| align="center" width="14.3%" |  
 
| align="center" width="14.3%" |  
 
| align="center" width="14.3%" |  
 
|-
 
|-
 
| align="center" width="14.3%" height="30" | 20:30-22:00
 
| align="center" width="14.3%" height="30" | 20:30-22:00
 
| align="center" width="14.3%" | '''[[Peter Beerli|Beerli]]''' <br/>(Migrate tutorial) <br/>
 
| align="center" width="14.3%" | '''[[Peter Beerli|Beerli]]''' <br/>(Migrate tutorial) <br/>
| align="center" width="14.3%" | '''[[SOWHAT|SOWHAT Demo]] ''' <br/>Participant analyses and discussion with workshop faculty
+
| align="center" width="14.3%" | Participant analyses and discussion with workshop faculty
 
| align="center" width="14.3%" |  
 
| align="center" width="14.3%" |  
 
|-
 
|-
 
|}
 
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Revision as of 09:10, 24 June 2016

First Week

Please download and install the software listed here: Downloads

Make T shirt suggestions Shirts2016 !

Shirts from previous years here! Email: eachambers at utmail<dot>utexas<dot>edu

All morning sessions are in Rowe, afternoons and evenings will be in room G70 of the Loeb building

Opening Reception: 7 PM Sunday, July 17th, Meigs Room, 2nd Floor of Swope

Monday
(18 July)
Tuesday
(19 July)
Wednesday
(20 July)
Thursday
(21 July)
Friday
(22 July)
Saturday
(23 July)
09:00-10:30 Hillis
Introduction
Lewis
(Likelihood in Phylogenetics)
Lewis
(Bayesian intro)
Bielawski
(Codon models, Part1)
Yoder
([Applications of Molecular Evolution, incl. Codon Models])
McTavish
([TBA])
10:30-12:00 Pearson
(Sequence databases)
Lewis
(Substitution models)
Lewis
(Bayesian intro)
Bielawski
(Codon models, Part2)
Yoder
([Applications of Molecular Evolution, incl. Codon Models])
Hillis
([History of Phylogenetics and Molecular Evolution])
12:00-14:00 Lunch break
14:00-15:30 Pearson
(FASTA/BLAST lab)
Zwickl
(Large scale ML inference)
Huelsenbeck
(Bayesian Phylogenetic Analysis)
Bielawski
(Lab notesJB_lab)
Dunn
([ Phylogenomics: Methods and applications])
Heath
(Divergence time estimation)
15:30-17:00 McTavish
( Computer lab)
Zwickl
(GARLI lab)
Huelsenbeck
(Bayesian Phylogenetic Analysis)
Bielawski
(Lab notesJB_lab)
Dunn
([ Phylogenomics: Methods and applications])
Heath
(BEAST 2)
17:00-19:00 Dinner break
19:00-20:30 Holder
(Multiple Sequence Alignment)
Swofford
( Model selection )
Heath/Landis
RevBayes
Holder
(Branch support and tests)
Course dinner/party
Lobster Boil; starts at 5 PM
20:30-22:00 McTavish
( Multiple Sequence Alignment Lab)
Swofford
(PAUP slidesPAUP* Exercise)
Heath/Landis
RevBayes
Holder
(Topology testing. continued)
Course dinner/party
Lobster Boil


Second Week

Monday
(27 July)
Tuesday
(28 July)
Wednesday
(29 July)
09:00-10:30 Beerli
(Introduction to the coalescent )
Edwards
(Multilocus phylogeography and phylogenetics)
(Participant analyses and discussion with workshop faculty)
10:30-12:00 Kubatko
(Species Tree Estimation)
Edwards
(Multilocus phylogeography and phylogenetics)
(Participant analyses and discussion with workshop faculty)
12:00-14:00 Lunch break
14:00-15:30 Kubatko
(Species Tree Lab I)
Edwards
(Species Tree Lab II)
15:30-17:00 Beerli
(Extensions to coalescence)
17:00-19:00 Dinner break
19:00-20:30 Beerli
(Migrate tutorial)
20:30-22:00 Beerli
(Migrate tutorial)
Participant analyses and discussion with workshop faculty