Difference between revisions of "Schedule"

From MolEvol
(Opening Reception: 7 PM Sunday, July 17th, Meigs Room, 2nd Floor of Swope)
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| align="center" width="14.3%" height="30" | 14:00-15:30
 
| align="center" width="14.3%" height="30" | 14:00-15:30
 
| align="center" width="14.3%" | '''[[William_Pearson|Pearson]]'''<br/>([http://fasta.bioch.virginia.edu/mol_evol/ FASTA/BLAST lab])
 
| align="center" width="14.3%" | '''[[William_Pearson|Pearson]]'''<br/>([http://fasta.bioch.virginia.edu/mol_evol/ FASTA/BLAST lab])
| align="center" width="14.3%" | '''[[Derrick_Zwickl|Zwickl]]'''<br/>([http://phylo.bio.ku.edu/woodshole/Zwickl-WoodsHole2015-lecture.pdf Large scale ML inference])
+
| align="center" width="14.3%" | '''[[David Swofford|Swofford]]'''<br/>( [https://molevol.mbl.edu/images/c/cd/Swofford_WH2015_modsel.pdf Model selection] )
 
| align="center" width="14.3%" |  '''[[John Huelsenbeck|Huelsenbeck]]'''<br/>(Bayesian Phylogenetic Analysis)
 
| align="center" width="14.3%" |  '''[[John Huelsenbeck|Huelsenbeck]]'''<br/>(Bayesian Phylogenetic Analysis)
 
| align="center" width="14.3%" |  '''[[Bielawski|Bielawski]]'''<br/>([https://molevol.mbl.edu/index.php/PAML_notes Lab notes][http://myweb.dal.ca/js551958/PAML_lab/lab.html JB_lab])
 
| align="center" width="14.3%" |  '''[[Bielawski|Bielawski]]'''<br/>([https://molevol.mbl.edu/index.php/PAML_notes Lab notes][http://myweb.dal.ca/js551958/PAML_lab/lab.html JB_lab])
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| align="center" width="14.3%" height="30" | 15:30-17:00
 
| align="center" width="14.3%" height="30" | 15:30-17:00
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''<br/>([[Computer lab introduction | Computer lab]])<br>'''  
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''<br/>([[Computer lab introduction | Computer lab]])<br>'''  
| align="center" width="14.3%" | '''[[Derrick_Zwickl|Zwickl]]'''<br/>([http://phylo.bio.ku.edu/slides/GarliDemo/garliExercise.WH2015.html GARLI lab])  
+
| align="center" width="14.3%" | '''[[David Swofford|Swofford]]'''<br/>([https://molevol.mbl.edu/images/7/7f/Swofford_WH2015_paup_demo.pdf PAUP slides][https://molevol.mbl.edu/index.php/PAUP*_Exercise PAUP* Exercise])
 
| align="center" width="14.3%" | '''[[John Huelsenbeck|Huelsenbeck]]'''<br/>(Bayesian Phylogenetic Analysis)
 
| align="center" width="14.3%" | '''[[John Huelsenbeck|Huelsenbeck]]'''<br/>(Bayesian Phylogenetic Analysis)
 
| align="center" width="14.3%" | '''[[Bielawski|Bielawski]]'''<br/>([https://molevol.mbl.edu/index.php/PAML_notes Lab notes][http://myweb.dal.ca/js551958/PAML_lab/lab.html JB_lab])
 
| align="center" width="14.3%" | '''[[Bielawski|Bielawski]]'''<br/>([https://molevol.mbl.edu/index.php/PAML_notes Lab notes][http://myweb.dal.ca/js551958/PAML_lab/lab.html JB_lab])
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| align="center" width="14.3%" height="30" | 19:00-20:30
 
| align="center" width="14.3%" height="30" | 19:00-20:30
 
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''<br/> ([[Multiple Sequence Alignment]])  
 
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''<br/> ([[Multiple Sequence Alignment]])  
| align="center" width="14.3%" | '''[[David Swofford|Swofford]]'''<br/>( [https://molevol.mbl.edu/images/c/cd/Swofford_WH2015_modsel.pdf Model selection] )
+
| align="center" width="14.3%" | '''[[Derrick_Zwickl|Zwickl]]'''<br/>([http://phylo.bio.ku.edu/woodshole/Zwickl-WoodsHole2015-lecture.pdf Large scale ML inference])
 
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''/'''[[Michael Landis|Landis]]'''<br/>[[RevBayes]]
 
| align="center" width="14.3%" | '''[[Tracy Heath|Heath]]'''/'''[[Michael Landis|Landis]]'''<br/>[[RevBayes]]
 
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''<br/>([http://phylo.bio.ku.edu/woodshole/HolderMSALectureWoodsHole2015.pdf Branch support and tests])
 
| align="center" width="14.3%" | '''[[MarkHolder|Holder]]'''<br/>([http://phylo.bio.ku.edu/woodshole/HolderMSALectureWoodsHole2015.pdf Branch support and tests])
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| align="center" width="14.3%" height="30" | 20:30-22:00
 
| align="center" width="14.3%" height="30" | 20:30-22:00
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''<br/>([[Alignment_tutorial | Multiple Sequence Alignment Lab]])
 
| align="center" width="14.3%" | '''[[Emily Jane McTavish|McTavish]]'''<br/>([[Alignment_tutorial | Multiple Sequence Alignment Lab]])
| align="center" width="14.3%" | '''[[David Swofford|Swofford]]'''<br/>([https://molevol.mbl.edu/images/7/7f/Swofford_WH2015_paup_demo.pdf PAUP slides][https://molevol.mbl.edu/index.php/PAUP*_Exercise PAUP* Exercise])
+
| align="center" width="14.3%" | '''[[Derrick_Zwickl|Zwickl]]'''<br/>([http://phylo.bio.ku.edu/slides/GarliDemo/garliExercise.WH2015.html GARLI lab])  
 
| align="center" width="14.3%" |  '''[[Tracy Heath|Heath]]'''/'''[[Michael Landis|Landis]]'''<br/>[[RevBayes]]
 
| align="center" width="14.3%" |  '''[[Tracy Heath|Heath]]'''/'''[[Michael Landis|Landis]]'''<br/>[[RevBayes]]
 
| align="center" width="14.3%" |  '''[[MarkHolder|Holder]]'''<br/>(Topology testing. continued)
 
| align="center" width="14.3%" |  '''[[MarkHolder|Holder]]'''<br/>(Topology testing. continued)

Revision as of 16:31, 24 June 2016

First Week

Please download and install the software listed here: Downloads

Make T shirt suggestions Shirts2016 !

Shirts from previous years here! Email: eachambers at utmail<dot>utexas<dot>edu

All morning sessions are in Rowe, afternoons and evenings will be in room G70 of the Loeb building

Opening Reception: 7 PM Sunday, July 17th, Meigs Room, 2nd Floor of Swope

Monday
(18 July)
Tuesday
(19 July)
Wednesday
(20 July)
Thursday
(21 July)
Friday
(22 July)
Saturday
(23 July)
09:00-10:30 Hillis
Introduction
Lewis
(Likelihood in Phylogenetics)
Lewis
(Bayesian intro)
Bielawski
(Codon models, Part1)
Dunn
(Phylogenomics: Methods and applications)
McTavish
(Ascertainment Bias in Phylogenetics)
10:30-12:00 Pearson
(Sequence databases)
Lewis
(Substitution models)
Lewis
(Bayesian intro)
Bielawski
(Codon models, Part2)
Dunn
(Phylogenomics: Methods and applications)
Hillis
(History of Phylogenetics and Molecular Evolution)
12:00-14:00 Lunch break
14:00-15:30 Pearson
(FASTA/BLAST lab)
Swofford
( Model selection )
Huelsenbeck
(Bayesian Phylogenetic Analysis)
Bielawski
(Lab notesJB_lab)
Heath
(Divergence time estimation)
Course Participants
(Lightning Talks)
15:30-17:00 McTavish
( Computer lab)
Swofford
(PAUP slidesPAUP* Exercise)
Huelsenbeck
(Bayesian Phylogenetic Analysis)
Bielawski
(Lab notesJB_lab)
Heath
(Divergence time estimation)
Course Participants
(Lightning Talks)
17:00-19:00 Dinner break
19:00-20:30 Holder
(Multiple Sequence Alignment)
Zwickl
(Large scale ML inference)
Heath/Landis
RevBayes
Holder
(Branch support and tests)

(Participant analyses and discussion with workshop faculty)
Course dinner/party
Lobster Boil; starts at 5 PM
20:30-22:00 McTavish
( Multiple Sequence Alignment Lab)
Zwickl
(GARLI lab)
Heath/Landis
RevBayes
Holder
(Topology testing. continued)

(Participant analyses and discussion with workshop faculty)
Course dinner/party
Lobster Boil


Second Week

Monday
(25 July)
Tuesday
(26 July)
Wednesday
(27 July)
09:00-10:30 Beerli
(Introduction to the coalescent )
Edwards
(Multilocus phylogeography and phylogenetics)
Kubatko
(Phylogenetic networks)
10:30-12:00 Kubatko
(Species Tree Estimation)
Edwards
(Multilocus phylogeography and phylogenetics)
Kubatko
(Phylogenetic networks)
12:00-14:00 Lunch break
14:00-15:30 Kubatko
(Species Tree Lab I)
Yoder
(Applications, species delimitation)
15:30-17:00 Beerli
(Extensions to coalescence)
Yoder
(Applications, species delimitation)
17:00-19:00 Dinner break
19:00-20:30 Beerli
(Migrate tutorial)
Edwards
(Species Tree Lab II)
20:30-22:00 Beerli
(Migrate tutorial)
Faculty
(Species Tree Lab III)