Difference between revisions of "Software"

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(Phylogenetic tree building and analysis)
(Phylogenetic tree building and analysis)
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* [http://beast.bio.ed.ac.uk/Main_Page BEAST] - software package includes BEAST, BEAUti, LogCombiner, TreeAnnotator
 
* [http://beast.bio.ed.ac.uk/Main_Page BEAST] - software package includes BEAST, BEAUti, LogCombiner, TreeAnnotator
 
* [http://www.stat.osu.edu/~dkp/BEST/introduction/ BEST]
 
* [http://www.stat.osu.edu/~dkp/BEST/introduction/ BEST]
 +
* [http://pythonhosted.org/DendroPy/ DendroPy]
 
* [http://phylo.bio.ku.edu/content/tracy-heath-dppdiv DPPDiv]
 
* [http://phylo.bio.ku.edu/content/tracy-heath-dppdiv DPPDiv]
 
*[http://www.microbesonline.org/fasttree/ FastTree]
 
*[http://www.microbesonline.org/fasttree/ FastTree]

Revision as of 10:41, 24 July 2013

Alignment

Phylogenetic tree building and analysis

Other

  • Bugs in a Box: A Macintosh program and its (python) source code to show the coalescence process (but still does not draw a tree).

Pipelines

Population analysis

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