Difference between revisions of "Software"
From MolEvol
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| − | * [http://beast.bio.ed.ac.uk/Main_Page BEAST] - software package includes | + | * [http://beast.bio.ed.ac.uk/Main_Page BEAST] - software package includes BEAST, BEAUti, LogCombiner, TreeAnnotator |
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* [http://blast.ncbi.nlm.nih.gov/Blast.cgi Blast] | * [http://blast.ncbi.nlm.nih.gov/Blast.cgi Blast] | ||
* [http://people.sc.fsu.edu/~pbeerli/bugs_in_a_box.tar.gz Bugs in a Box]: A Macintosh program and its (python) source code to show the coalescence process (but still does not draw a tree). | * [http://people.sc.fsu.edu/~pbeerli/bugs_in_a_box.tar.gz Bugs in a Box]: A Macintosh program and its (python) source code to show the coalescence process (but still does not draw a tree). | ||
Revision as of 15:26, 18 July 2012
- BEAST - software package includes BEAST, BEAUti, LogCombiner, TreeAnnotator
- Blast
- Bugs in a Box: A Macintosh program and its (python) source code to show the coalescence process (but still does not draw a tree).
- Fasta
- FigTree
- GARLI
- LAMARC: Demonstration and Tutorial on Augst 2nd (Peter Beerli)
- Lamarc main website: Dowload and manual
- Lamarc tutorial
- MAFFT
- MIGRATE
- Migrate main website: Download, Manual, Blog/Tutorials, Information on speed, citation of MIGRATE in the literature.
- Migrate tutorial: Tutorial for the course 2011 (same tutorial on the Migrate tutorial website)
- Migrate support google Group
- MrBayes
- PAML
- PAUP*
- STEM
- Tracer
