Difference between revisions of "Tracy Heath"

From MolEvol
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* Phylogenetic Inference using [[RevBayes]] (with [[Michael Landis]])
 
* Phylogenetic Inference using [[RevBayes]] (with [[Michael Landis]])
* [http://phyloworks.org/workshops/divtime.html Bayesian Divergence Time Estimation in BEAST2] (slides)
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* [http://phyloworks.org/workshops/divtime.html Bayesian Divergence Time Estimation in BEAST2] ([http://phyloworks.org/workshops/WH_2015_divtime_lec_d.pdf slides])
  
 
== Suggested Reading ==
 
== Suggested Reading ==

Revision as of 08:07, 25 July 2015

Thsquare.jpg

Assistant Professor
Dept. Ecology, Evolution, & Organismal Biology
Iowa State University


Contact Information

Research

Heath.jpg

I develop statistical models for use as priors in Bayesian methods for phylogenetic inference. In particular, I'm interested in divergence-time estimation -- e.g. modeling rate variation across the tree of life, diversification processes, and methods for incorporating information from the fossil record.


Time at MBL

Sunday July 19 - Wednesday July 29


2015 Course

Suggested Reading

Graphical Models

  • Höhna, Heath, Boussau, Landis, Ronquist, Huelsenbeck. 2014. Probabilistic graphical model representation in phylogenetics. Systematic Biology, in press. (doi: 10.1093/sysbio/syu039).

Divergence-Time Estimation

  • Thorne and Kishino. 2005. Estimation of divergence times from molecular sequence data. In: Nielsen R, editor, Statistical Methods in Molecular Evolution. New York: Springer, pp. 235–256. (PDF)
  • Heath and Moore. 2014. Bayesian inference of species divergence times. In: Bayesian Phylogenetics: Methods, Algorithms, and Applications. Chen, M.-H., L. Kuo, and P.O. Lewis (editors). Chapman & Hall/CRC. (book chapter email me for PDF)
  • BEAST2 Book: Drummond AJ, Bouckaert RR. 2014. Bayesian evolutionary analysis with BEAST 2. Cambridge University Press. (http://www.beast2.org/book.html)
  • Lartillot: blog post on diversification: http://bayesiancook.blogspot.com/2013/12/two-sides-of-same-coin.html
  • also see references in divergence-time tutorial