Difference between revisions of "Tracy Heath"

From MolEvol
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[[Divergence Times]]
 
[[Divergence Times]]
 
== Lecture ==
 
Bayesian methods for dating species divergences ([https://molevol.mbl.edu/wiki/images/6/6e/WHME_2012_lecture.pdf slides])
 
 
== Lab Practical: Divergence time estimation using BEAST ==
 
 
=== Tutorial ===
 
* Detailed tutorial [https://molevol.mbl.edu/wiki/images/f/ff/WHME_12_BEAST_tutorial.pdf PDF] (final version...I think)
 
 
=== Data and Output Files ===
 
Downloads:
 
* [https://molevol.mbl.edu/wiki/images/f/fc/Whme_beast_data.tar.gz Data files]
 
* Output files
 
** [https://molevol.mbl.edu/wiki/images/d/d8/Whme_beast_output1.tar.gz output 1]
 
** [https://molevol.mbl.edu/wiki/images/d/db/Whme_beast_output2.tar.gz output 2]
 
** [https://molevol.mbl.edu/wiki/images/b/ba/Whme_beast_output3.tar.gz output 3]
 
 
=== Software ===
 
 
* [http://beast.bio.ed.ac.uk/Main_Page BEAST] - software package includes:
 
** BEAST
 
** BEAUti
 
** LogCombiner
 
** TreeAnnotator
 
* [http://tree.bio.ed.ac.uk/software/figtree/ FigTree]
 
* [http://tree.bio.ed.ac.uk/software/tracer/ Tracer]
 
* [http://packages.python.org/DendroPy/ DendroPy] (*optional)
 
* [http://bodegaphylo.wikispot.org/starttree_program starttree] (*optional)
 

Revision as of 09:13, 28 July 2012

Heath.jpg
Ddday.JPG

Institutional home pages

http://phylo.bio.ku.edu/content/tracy-heath

http://cteg.berkeley.edu/members/heath.html


Time at MBL

Sunday July 22 - Wednesday August 1

2012 Course

I presented a lecture on Bayesian methods for estimating species divergence times followed by a tutorial on relaxed clock analysis in BEAST.

Divergence Times