Difference between revisions of "Tracy Heath"

From MolEvol
(2014 Course)
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* Phylogenetic Inference using [[RevBayes]] (with [[Michael Landis]])
 
* Phylogenetic Inference using [[RevBayes]] (with [[Michael Landis]])
 
* [[Bayesian inference of species divergence times in BEAST2]]
 
* [[Bayesian inference of species divergence times in BEAST2]]
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== Suggested Reading ==
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Graphical Models
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* Höhna, Heath, Boussau, Landis, Ronquist, Huelsenbeck. 2014. Probabilistic graphical model representation in phylogenetics. Systematic Biology, in press. doi: 10.1093/sysbio/syu039.
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Reviews on Divergence-Time Estimation
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* Thorne JL, Kishino H. 2005. Estimation of divergence times from molecular sequence data. In: Nielsen R, editor, Statistical Methods in Molecular Evolution. New York: Springer, pp. 235–256. ([ftp://statgen.ncsu.edu/pub/thorne/mypapers/clockreview1215wfigs.pdf PDF])
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* Heath and Moore. 2014. Bayesian inference of species divergence times. In: Bayesian Phylogenetics: Methods, Algorithms, and Applications. Chen, M.-H., L. Kuo, and P.O. Lewis (editors). Chapman & Hall/CRC. (book chapter email me for PDF)

Revision as of 09:35, 2 August 2014

Thsquare.jpg

Current:
Postdoctoral Researcher
University of Kansas and University of California, Berkeley

In January 2015:
Assistant Professor
Dept. Ecology, Evolution, & Organismal Biology
Iowa State University


Contact Information


Research

Heath.jpg

I develop statistical models for use as priors in Bayesian methods for phylogenetic inference. In particular, I'm interested in divergence-time estimation -- e.g. modeling rate variation across the tree of life, diversification processes, and methods for incorporating information from the fossil record.


Time at MBL

Sunday July 27 - Wednesday August 6


2014 Course


Suggested Reading

Graphical Models

  • Höhna, Heath, Boussau, Landis, Ronquist, Huelsenbeck. 2014. Probabilistic graphical model representation in phylogenetics. Systematic Biology, in press. doi: 10.1093/sysbio/syu039.

Reviews on Divergence-Time Estimation

  • Thorne JL, Kishino H. 2005. Estimation of divergence times from molecular sequence data. In: Nielsen R, editor, Statistical Methods in Molecular Evolution. New York: Springer, pp. 235–256. (PDF)
  • Heath and Moore. 2014. Bayesian inference of species divergence times. In: Bayesian Phylogenetics: Methods, Algorithms, and Applications. Chen, M.-H., L. Kuo, and P.O. Lewis (editors). Chapman & Hall/CRC. (book chapter email me for PDF)